View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20972_low_2 (Length: 444)
Name: NF20972_low_2
Description: NF20972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20972_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 444
Target Start/End: Complemental strand, 48964860 - 48964429
Alignment:
| Q |
13 |
aacacatcatatatatgatcagtcgatggatagacacaagtcgtaaaagtttgcagttttatttagaatattattaactgtagagggaaattggatgtgg |
112 |
Q |
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| T |
48964860 |
aacacatcatatatatgatcagtcgatggatagacacaagtcgtaaaagtttgcagttttatttagaatattattaactgtagagggaaattggatgtgg |
48964761 |
T |
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| Q |
113 |
catgcttttcgtgataagaaattaaatttgaagctgtagcatatttctcagttagaaaacaaggtaaggaacaaaggatgagtatctcattctttctaaa |
212 |
Q |
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| T |
48964760 |
catgcttttcgtgataagaaattaaatttgaagctgtagcatatttctcagttagaaaacaaggtaaggaacaaaggatgagtatctcattctttctaaa |
48964661 |
T |
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| Q |
213 |
ctttctttcttctaactcttttattcaatgcaaagcactggaacatgaaactttttacatacttcagttaaccatgatcattccattcagtcttctggca |
312 |
Q |
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| T |
48964660 |
ctttctttcttctaactcttttattcaatgcaaagcactggaacatgaaactttttacatacttcagttaaccatgatcattccattcagtcttctggca |
48964561 |
T |
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| Q |
313 |
tagtttaataagggatgacaaaattattagtcattttccaattacaaatctctctttagtgcgcttcaagatgggggcatctgtacagccctatatgcct |
412 |
Q |
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| T |
48964560 |
tagtttaataagggatgacaaaattattagtcattttccaattagaaatctctctttagtgcgcttcaagatgggggcatctgtacagccctatatgcct |
48964461 |
T |
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| Q |
413 |
aataacaatataacccctaaaattgccaagac |
444 |
Q |
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| T |
48964460 |
aataacaatataacccctaaaattgccaagac |
48964429 |
T |
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