View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20972_low_4 (Length: 396)
Name: NF20972_low_4
Description: NF20972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20972_low_4 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 40838062 - 40837964
Alignment:
| Q |
298 |
tcgaccgtaattcttcagcatttaagttttgtannnnnnn-agtaatatcttgaacttgaagttgcataacctagttaactcatctatatcccatttcat |
396 |
Q |
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| T |
40838062 |
tcgaccgtaattcttcagcatttaagttt-gtattttttttagtaatatcttgaacttgaagttgcataacctagttaactcatctatatcccatttcat |
40837964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 40838170 - 40838099
Alignment:
| Q |
77 |
aacgaactgtagttcaaagatgagatagtactgcaattagttaaacctacggcagaaatttgtcacttaaat |
148 |
Q |
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| T |
40838170 |
aacgaactatagttcaaagttgagatagtactgcaattagttacacctacggcagaaatttgtcacttaaat |
40838099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 40838227 - 40838188
Alignment:
| Q |
18 |
tttgaattgtttcgttcctttacttgttggatcaatatca |
57 |
Q |
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| T |
40838227 |
tttgaattgtttcgttcctttatttgttggatcaatatca |
40838188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 40838944 - 40838905
Alignment:
| Q |
18 |
tttgaattgtttcgttcctttacttgttggatcaatatca |
57 |
Q |
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| T |
40838944 |
tttgaattgtttcgttcctttatttgttggatcaatatca |
40838905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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