View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20972_low_5 (Length: 372)
Name: NF20972_low_5
Description: NF20972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20972_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 23390533 - 23390875
Alignment:
| Q |
16 |
ttgcggtcacgaccacaacagtcacaatcctt--tcttatggaaaaatgtggctaatgcacatgttacgaatgcagagacattaaaaaggttgatgtcac |
113 |
Q |
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| T |
23390533 |
ttgcggtcacggcagcaacaatcacaatccttgatattacggaaaaatgcggctaatatactagttgcggatgcagagacattaaaaagtttgatgtcac |
23390632 |
T |
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| Q |
114 |
aacccaaattatggttacaaaccattttttaaaatcctacaaatgataatataaga--ataaaaagaagagagacacagattttaattacctcctttaac |
211 |
Q |
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| T |
23390633 |
a-cccaaattacggttacaaactattttttaaaatcctacaaatgataatataagagaagaaaaagaagagagacacagattttaattacctcctttaac |
23390731 |
T |
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| Q |
212 |
ttaatttaattagctaatgaagttgacactgattttgacataccaaacttctattcttctttcatatatactaatagaagggatgagaagcactttatac |
311 |
Q |
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| T |
23390732 |
ttaatttaaatagctaatgaagttgacactgattttgacataccaaacttctattcttctttcatatatactaatagaagggatgagaagcactttatgc |
23390831 |
T |
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| Q |
312 |
ttgattaatacctgcattacagaaaagaatgcaaacagaatttg |
355 |
Q |
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| T |
23390832 |
ttgattaatacctgcattacagaaaagaatgcaaaaagaatttg |
23390875 |
T |
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