View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20972_low_6 (Length: 307)
Name: NF20972_low_6
Description: NF20972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20972_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 3801221 - 3800938
Alignment:
| Q |
11 |
cataggtgtggtgtcgtgtgtccaagaccagaacacatctaatccgagaagtgtccatgaacatatatacaaaga--aaaaagagaacagcactaattca |
108 |
Q |
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| T |
3801221 |
cataagtgtggtgtcgtgtgtccgagaccagaacacatctaattcgagaagtatctgtgaacatatatagaaagagaaaaaagagaacaacactaattca |
3801122 |
T |
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| Q |
109 |
aaacaacaagtaatagattataaatacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccaccttcttctatattattaat |
208 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3801121 |
aaacaacaagtaatagattataaacacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccaccttcttctatattagtaat |
3801022 |
T |
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| Q |
209 |
agtcattttcttcattttcaaacgcattgcctttatgtcatcatcaccaactacttgatccaccttcttctttatctctttcct |
292 |
Q |
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| T |
3801021 |
agtcattttcttcattttcaaacacattgcctttatgtcatcatcaccaactacttgatacaccttcttctttatctctttcct |
3800938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 3788968 - 3789165
Alignment:
| Q |
94 |
aacagcactaattcaaaacaacaag---taatagattataaatacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
190 |
Q |
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|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
3788968 |
aacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaactaataaacttttgaagattatgtgatgactggccacc |
3789067 |
T |
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| Q |
191 |
ttcttctatattattaatagtcattttcttcattttcaaacgcattgcctttatgtcatcatcaccaactacttgatccaccttcttctttatctctt |
288 |
Q |
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| T |
3789068 |
ttcttctatattagtaatagtcattttcttcattttcaaacacatttcctttatgtcatcatcaccaactacttgatccaccttcttctttatctctt |
3789165 |
T |
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