View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20972_low_8 (Length: 221)
Name: NF20972_low_8
Description: NF20972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20972_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 38213826 - 38213635
Alignment:
| Q |
18 |
agatcaatgatgaagaacatataatagccatctta-----atttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttaga |
111 |
Q |
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| T |
38213826 |
agatcaatgatgaagaacatataatagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgtctatcttaga |
38213727 |
T |
|
| Q |
112 |
taacacgtgatcaaataaatcaaattctttgtagtttgtatcacttccttatcagttttcggtatattgagaacactatatataccctgttc |
203 |
Q |
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| T |
38213726 |
taacatgtgatcaaataaatcacattctttgtagtttgtaccacttccttatcagttttcggtatattgagaacactatatataccctgttc |
38213635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 38218045 - 38217913
Alignment:
| Q |
18 |
agatcaatgatgaagaacatataatagccatctta-----atttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttaga |
111 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||| |
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| T |
38218045 |
agatcaatgatgaagaacatataatagccatcttattttaatttgttatgattctttgattttatatattcctctatatttttttggtgtctattttaga |
38217946 |
T |
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| Q |
112 |
taacacgtgatcaaataaatcaaattctttgta |
144 |
Q |
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| T |
38217945 |
tagcacatgatcaaataaatcaaattctttgta |
38217913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 42993602 - 42993697
Alignment:
| Q |
50 |
ttaatttgttatgattcttttattttatatattcctctatatatttt-ggtgtctatcttagataacacgtgatcaaataaatcaaattctttgta |
144 |
Q |
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| T |
42993602 |
ttaatttattatgattctttgatttactatcttcctctgtatttttttggtgtctgttttatataacagatgatgaaataaatcaaattctttgta |
42993697 |
T |
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