View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20973_high_4 (Length: 357)
Name: NF20973_high_4
Description: NF20973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20973_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 33790861 - 33791189
Alignment:
| Q |
15 |
tctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaaga |
114 |
Q |
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| T |
33790861 |
tctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcaggggtgtgacgcatccatattaatagactcaaaga |
33790960 |
T |
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| Q |
115 |
agggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatc |
214 |
Q |
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| T |
33790961 |
agggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatcaaaagaatcctagaaaatgcatgtccatc |
33791060 |
T |
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| Q |
215 |
aacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatgga |
314 |
Q |
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| T |
33791061 |
aacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagttacaatgttcctacaggaagacgtgatgga |
33791160 |
T |
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| Q |
315 |
ttagtatcaactgttgatgatgtccatct |
343 |
Q |
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| T |
33791161 |
ttagtatcaactgttaatgatgtacatct |
33791189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 317
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
203 |
tgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
302 |
Q |
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| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
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| Q |
303 |
agacgtgatggatta |
317 |
Q |
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| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
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