View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20974_high_4 (Length: 471)
Name: NF20974_high_4
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20974_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 39493480 - 39493036
Alignment:
| Q |
8 |
gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39493480 |
gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcc |
39493381 |
T |
|
| Q |
108 |
atgggttttgcagaaaaaatatcaggcaagatatctataatttgccttatttttctttcatatggtgttatggatcaccacatttatacacatgaaattg |
207 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39493380 |
atgggttttgcagataaaatatcaggcaagatatctataatttgccttatttttctttcatatggtgttatggatcaccacatttatacacatgaaattg |
39493281 |
T |
|
| Q |
208 |
aactgatatgttggcttcatacacttgatgcaaaatttaacatgttggttaattcttggaaaataaaatacacatattttgaacaatttattgaagtata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| || |
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| T |
39493280 |
aactgatatgttggcttcatacacttgatgcaaaatttaacatgttggttaattcttggaaaataaaatacacaaattttgaacaatttattcaagtgta |
39493181 |
T |
|
| Q |
308 |
cttcatcttttgtttcctagagcttattgtatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatc |
407 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39493180 |
ctt----ttttgtttcctagagcttattgtatagctgttttggtcagtttaatgaagtggaattttcttacaccttgcaggttttgtcaagaatcttatc |
39493085 |
T |
|
| Q |
408 |
aagcaacggcaatataatgaagctgtcagattcagccgcgtatataact |
456 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
39493084 |
aagcaacggcaatatgatgaagctgtcagattcagccgtgtatataact |
39493036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 39425574 - 39425439
Alignment:
| Q |
8 |
gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcc |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||| || || || ||||| ||||| || | ||||||||||||||||||| | | ||| ||||||||||||||| |
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| T |
39425574 |
gtcaatttatggactggttccttctttcgacgaagaagaagttttgaagcttttcgaacttgtttctcagcacaacttagctgtagagctgtttggggcc |
39425475 |
T |
|
| Q |
108 |
atgggttttgcagaaaaaatatcaggcaagatatct |
143 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
39425474 |
atgggttttgcagataaaatatcaggcaagatatct |
39425439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 39144737 - 39144892
Alignment:
| Q |
8 |
gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcc |
107 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||| |||| | ||| ||||||||||||||| |
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| T |
39144737 |
gtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagctttttggacttgtttctcagcacgacatagctgtagagctgtttggggcc |
39144836 |
T |
|
| Q |
108 |
atgggttttgcagaaaaaatatcaggcaagatatctataatttgccttatttttct |
163 |
Q |
| |
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|||| |||||| | |||||||| || |||||||||| || |||||| ||||||| |
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| T |
39144837 |
ttgggatttgcaaataaaatatctggtaagatatctaatatctgccttgtttttct |
39144892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 39188794 - 39188659
Alignment:
| Q |
9 |
tcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcca |
108 |
Q |
| |
|
||||||||||| ||||||| |||||| |||| ||||| ||||||||||| |||||||||||||||||| || |||| | || ||||| ||||||||| |
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| T |
39188794 |
tcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttttggacttgtttctcagtacgacataggcgtagagctatttggggcct |
39188695 |
T |
|
| Q |
109 |
tgggttttgcagaaaaaatatcaggcaagatatcta |
144 |
Q |
| |
|
| ||||||||||| |||||||| || |||||||||| |
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| T |
39188694 |
taggttttgcagataaaatatctggtaagatatcta |
39188659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 324 - 456
Target Start/End: Original strand, 39131237 - 39131368
Alignment:
| Q |
324 |
ctagagcttattgtatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacggcaatata |
423 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||| ||| ||| ||||||||||||||||| || ||||||| |||||||| ||||| || |||||| |
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| T |
39131237 |
ctagagcttactttatagctgttt-ggtcagtttgatggagttaaattttcttacaccttgcagattttgtcgagaatcttttcaagagacagcaatacg |
39131335 |
T |
|
| Q |
424 |
atgaagctgtcagattcagccgcgtatataact |
456 |
Q |
| |
|
||||||||||||||||||| || |||||||||| |
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| T |
39131336 |
atgaagctgtcagattcagtcgtgtatataact |
39131368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 456
Target Start/End: Original strand, 39125230 - 39125369
Alignment:
| Q |
316 |
tttgtttcctagagcttattgtatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacg |
415 |
Q |
| |
|
||||||| ||||| |||||| |||||| ||||| |||||||| ||||||| ||||| |||| |||||| || ||||||| |||||||||||||| || |
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| T |
39125230 |
tttgtttactagaacttattttatagcagtttttgtcagtttggtgaagtgaaattt-cttaaaccttgcagtttttgtcgagaatcttatcaagagaca |
39125328 |
T |
|
| Q |
416 |
gcaatataatgaagctgtcagattcagccgcgtatataact |
456 |
Q |
| |
|
||||||| |||||||||| |||||||| || | |||||||| |
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| T |
39125329 |
gcaatatgatgaagctgttagattcagtcgtgcatataact |
39125369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 439
Target Start/End: Original strand, 39469057 - 39469159
Alignment:
| Q |
337 |
tatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacggcaatataatgaagctgtcag |
436 |
Q |
| |
|
||||||||||||||||||||| |||||| | ||||||| | || ||| ||||||||| |||||||||||||| || ||||| |||||||||| || |
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| T |
39469057 |
tatagctgttttggtcagtttgatgaagcgaaattttcgcagacattgtaggttttgttgagaatcttatcaagagacaagaatatgatgaagctgttag |
39469156 |
T |
|
| Q |
437 |
att |
439 |
Q |
| |
|
||| |
|
|
| T |
39469157 |
att |
39469159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 2362820 - 2362927
Alignment:
| Q |
8 |
gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaacattgttgtggagctgtttggggcc |
107 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||| ||||| |||||||||| ||||| ||| | |||| ||||| || ||| |||||||||||| | |
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| T |
2362820 |
gtcaatttatggattggtttcttctttcgatgaagatgaaattttaaagctttttgggtttgctgctcaacacaagatatctgtagagctgtttgggact |
2362919 |
T |
|
| Q |
108 |
atgggttt |
115 |
Q |
| |
|
|||||||| |
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|
| T |
2362920 |
atgggttt |
2362927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 39604457 - 39604507
Alignment:
| Q |
8 |
gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagct |
58 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
39604457 |
gtcaatttatggattggctccttctttcgatgaagatgaagttttaaagct |
39604507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 455
Target Start/End: Original strand, 2363534 - 2363630
Alignment:
| Q |
359 |
atgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacggcaatataatgaagctgtcagattcagccgcgtatataac |
455 |
Q |
| |
|
|||||||| ||||||| | ||||||| || |||||| |||||||||||| | | | |||||||| ||| ||||| ||||||| | ||| ||||||| |
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| T |
2363534 |
atgaagtgaaattttcctgcaccttgcagattttgttcagaatcttatcatgaagcagcaatatattgaggctgttagattcatctgcgcatataac |
2363630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 33152253 - 33152327
Alignment:
| Q |
8 |
gtcaatttatggactggttccatctttcgatgaggatgaggttttaaagctatttggacttgtttctcagcacaa |
82 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||| ||||| ||||||||||| |||||| | ||| |||| ||||| |
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| T |
33152253 |
gtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaatcgttgctcaacacaa |
33152327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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