View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20974_high_6 (Length: 422)

Name: NF20974_high_6
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20974_high_6
NF20974_high_6
[»] chr1 (3 HSPs)
chr1 (112-422)||(15594150-15594460)
chr1 (159-295)||(34467661-34467797)
chr1 (104-366)||(4679353-4679615)
[»] chr2 (6 HSPs)
chr2 (1-366)||(16662797-16663162)
chr2 (261-355)||(16658333-16658427)
chr2 (150-239)||(7541373-7541462)
chr2 (132-205)||(11998670-11998743)
chr2 (130-201)||(12246376-12246447)
chr2 (261-310)||(12246267-12246316)
[»] chr7 (12 HSPs)
chr7 (120-356)||(8615835-8616071)
chr7 (111-356)||(8586518-8586763)
chr7 (104-213)||(8640653-8640762)
chr7 (261-392)||(8666680-8666811)
chr7 (112-213)||(8645992-8646093)
chr7 (165-366)||(3146432-3146633)
chr7 (165-366)||(13334167-13334368)
chr7 (165-392)||(10495147-10495374)
chr7 (265-366)||(17259498-17259599)
chr7 (1-87)||(8586787-8586873)
chr7 (263-358)||(6788775-6788870)
chr7 (265-366)||(17267201-17267302)
[»] chr4 (2 HSPs)
chr4 (109-350)||(30774361-30774602)
chr4 (304-358)||(35131763-35131817)
[»] chr8 (2 HSPs)
chr8 (104-211)||(43743920-43744027)
chr8 (109-208)||(43445794-43445894)
[»] chr5 (1 HSPs)
chr5 (104-211)||(28219022-28219129)
[»] chr6 (2 HSPs)
chr6 (109-213)||(12488610-12488715)
chr6 (168-212)||(28910545-28910589)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 112 - 422
Target Start/End: Original strand, 15594150 - 15594460
Alignment:
Q  112 tttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatctt 211  Q
    |||||||| |||| ||||||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  15594150 tttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattacctccgccttccttaggaatttctcatctt 15594249  T
Q  212 cagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagt 311  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594250 cagcacgatattcctcggcttcttgaatcatttttttaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagt 15594349  T
Q  312 ggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcatctttcaaaggtctggccacggggacccgaagtgcaagaaagagtc 411  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15594350 ggatgtttccttcacagaaacagtcaggatagcattttcatcgatagcaaagcatccttcaaaggtctggccacggggacccgaagtgcaagaaagagtc 15594449  T
Q  412 aacataccaag 422  Q
    |||||||||||    
T  15594450 aacataccaag 15594460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 159 - 295
Target Start/End: Complemental strand, 34467797 - 34467661
Alignment:
Q  159 gcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatat 258  Q
    ||||||| | ||| ||||||||| || ||||||||||| |||||||| ||||||| |||| || ||||| |||||| ||||||       |||||| | |    
T  34467797 gcagtcaaccaattcattcattaactcggccttccttaagaatttcttatcttcaacacggtaatcctcagcttctcgaatcatttcttcaatttctttt 34467698  T
Q  259 gctgacaacctttctttgtcattggttattgtgatct 295  Q
    |  ||||||||| ||||||||||||||||||| ||||    
T  34467697 gtcgacaaccttcctttgtcattggttattgtaatct 34467661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 366
Target Start/End: Complemental strand, 4679615 - 4679353
Alignment:
Q  104 aagaaagctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaattt 203  Q
    |||| |||||||| ||||||| ||| ||||||| ||||||| | |  |||||||  ||    || |||||| |||||||||| ||||||||||  |||||    
T  4679615 aagagagctttaaattaacatccttcttctttaaagcattcttgatattgtaaacacaaaattccaatgcactcattaccttagccttccttaaaaattt 4679516  T
Q  204 ctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgta 303  Q
    || ||||||  | ||||||| ||| ||||||| |||||       || || | ||| || |||||||||||| ||||||||||| ||||||| ||| |||    
T  4679515 cttatcttcctcgcgatatttctcagcttcttcaatcagttttttaacttgaaatgttgtcaacctttctttttcattggttatggtgatcttgttcgta 4679416  T
Q  304 ttgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcat 366  Q
    || || || ||  |||| ||  |||||||||| | | | |||||| |||| ||||||||||||    
T  4679415 tttcctgtagacatttctttagcagaaacagttagggtgccatttgcatctatagcaaagcat 4679353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 16663162 - 16662797
Alignment:
Q  1 ttcagataatcctcaagaacatccacttcattcccctggttcttctcatgaagcaaatctttagccaccgtaattgcatgattgatcnnnnnnnnnnnnn 100  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  16663162 ttcagatgatcctcaagaacatctacttcattcccctggttcttctcatgaagcaaatctttagccaccgtaattgcatgattgatctttttattttttt 16663063  T
Q  101 ggaaagaaagctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaa 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16663062 ggaaagaaagctttaatttgacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaa 16662963  T
Q  201 tttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgttt 300  Q
    |||||||||||||||| | || ||||  |||||||||||||       ||||||   |   || ||||||||||||||||||||||| |||||||| ||     
T  16662962 tttctcatcttcagcatggtactccttagcttcttgaatcaatttttcaatttcgactctggataacctttctttgtcattggttatcgtgatctcattc 16662863  T
Q  301 gtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagcat 366  Q
     || | || |||||| ||||||   | |||||||| | ||| || |||||||||||||||||||||    
T  16662862 ttacttccggtggatctttcctctgctgaaacagttaagatgccgttttcatcgatagcaaagcat 16662797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 16658427 - 16658333
Alignment:
Q  261 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcga 355  Q
    |||||| |||||||| ||||||||||| ||||||| ||||||||| || || |||  ||||||  |||||||||| | |||||||||||||||||    
T  16658427 tgacaatctttctttttcattggttatggtgatcttgtttgtatttcctgtagatacttccttagcagaaacagttaggataccattttcatcga 16658333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 7541373 - 7541462
Alignment:
Q  150 tttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaat 239  Q
    |||||||||| ||||||| ||| |||||| | | ||||||||||||||||||||||  ||||||  ||| |||| ||| |||||||||||    
T  7541373 tttgtaaatgtagtcatccaatacattcactgctttggccttccttaggaatttcttgtcttcaatacggtatttctcagcttcttgaat 7541462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 11998670 - 11998743
Alignment:
Q  132 ctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttct 205  Q
    ||||| |||||| |||| |||||||||| ||||||| ||||||||||   | | ||||||||||||||||||||    
T  11998670 ctttaaagcatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttct 11998743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 12246447 - 12246376
Alignment:
Q  130 ttctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaat 201  Q
    ||||||| |||||| | || |||||||||| ||||||| || ||||||| | | ||||||||||||||||||    
T  12246447 ttctttaaagcatttcccattttgtaaatgtagtcatccaaagcattcactgctttggccttccttaggaat 12246376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 12246316 - 12246267
Alignment:
Q  261 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 310  Q
    ||||||||||||||||| ||| |||||||| ||||| |||| ||||||||    
T  12246316 tgacaacctttctttgtaattagttattgtaatctcatttgaattgccag 12246267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 120 - 356
Target Start/End: Original strand, 8615835 - 8616071
Alignment:
Q  120 aacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatcttcagcacga 219  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||     
T  8615835 aacatccttattctttagagcattcctcaacttgtaaatgcagtcatctaattcattcattaccttggccttccttaggaatttttcatcttcagcgcgg 8615934  T
Q  220 tattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgttt 319  Q
    || ||||| |||||||||||||       ||||||||  || || ||||||||||||||||||||||| || || || |||||||||||||| ||| |||    
T  8615935 tactcctctgcttcttgaatcagttttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcatttgtattgccagtagattttt 8616034  T
Q  320 ccttcacagaaacagtcatgataccattttcatcgat 356  Q
    ||||| |||| ||||| | ||||||||| || |||||    
T  8616035 ccttcgcagatacagtaaggataccattatcgtcgat 8616071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 111 - 356
Target Start/End: Complemental strand, 8586763 - 8586518
Alignment:
Q  111 ctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatct 210  Q
    ||||| ||||| || ||||||||||||||||||||| || |||||||  || |||||||||| |||||||||||| ||||||||||||||||||| |||     
T  8586763 ctttagtttaatatccttattctttagagcattccttaacttgtaaacacaatcatctaatgaattcattaccttagccttccttaggaatttctgatcc 8586664  T
Q  211 tcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgccag 310  Q
    |||||  | ||  |||| |||||||||||||       ||||||||  || || ||||||||||||||||||||||| || || ||||||||||||||||    
T  8586663 tcagcgaggtacacctctgcttcttgaatcagtcttttaatttcatcagccgataacctttctttgtcattggttatcgttatttcgtttgtattgccag 8586564  T
Q  311 tggatgtttccttcacagaaacagtcatgataccattttcatcgat 356  Q
     |||| |||||||| |||||||||| | ||||||||||||||||||    
T  8586563 aggatatttccttcgcagaaacagttaggataccattttcatcgat 8586518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 8640762 - 8640653
Alignment:
Q  104 aagaaagctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaattt 203  Q
    |||| ||||||| ||||| || ||||||||||||||||||| |||  ||||||||||| |  |||||| |||||||||  ||||||||||||||||||||    
T  8640762 aagagagctttagtttaatatccttattctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggccttccttaggaattt 8640663  T
Q  204 ctcatcttca 213  Q
    |||| |||||    
T  8640662 ctcagcttca 8640653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 261 - 392
Target Start/End: Original strand, 8666680 - 8666811
Alignment:
Q  261 tgacaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagca 360  Q
    ||||||||||||||||||||||||||| ||||||  |||  ||||||| |||||| ||||| |  ||| |||||||| ||||||||||||||| || | |    
T  8666680 tgacaacctttctttgtcattggttatggtgatcatgttcatattgcctgtggatatttccctagcagtaacagtcaggataccattttcatcaattgaa 8666779  T
Q  361 aagcatctttcaaaggtctggccacggggacc 392  Q
    ||||||   || |||| |||||||||||||||    
T  8666780 aagcatacctccaagggctggccacggggacc 8666811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 8645992 - 8646093
Alignment:
Q  112 tttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcatctt 211  Q
    ||||||||||||| |||  |||||||||| ||| |||  || |||||||| |  |||||| |||||||||| ||||||||||||||||||||||||||||    
T  8645992 tttaatttaacatccttcctctttagagctttcttcagcttataaatgcaatggtctaatccattcattacattggccttccttaggaatttctcatctt 8646091  T
Q  212 ca 213  Q
    ||    
T  8646092 ca 8646093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 366
Target Start/End: Original strand, 3146432 - 3146633
Alignment:
Q  165 atctaatgcattcattaccttggccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgac 264  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||| ||| |||| || |  || |||||||  ||||       |||||| |  | ||||    
T  3146432 atctaatgcattcattacattggccttccttagaaatttttcatcctcaacacggtaattttcagcttctttgatcatttttataatttcttgggatgac 3146531  T
Q  265 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 364  Q
    || |||||||||||||| |||| ||| ||||| || ||| | ||||||||| |||| ||  |||||||| | | ||| |||||||||| ||||| |||||    
T  3146532 aatctttctttgtcattagttactgtaatctcattcgtactaccagtggatttttcattagcagaaacaattaagatgccattttcattgatagtaaagc 3146631  T
Q  365 at 366  Q
    ||    
T  3146632 at 3146633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 366
Target Start/End: Complemental strand, 13334368 - 13334167
Alignment:
Q  165 atctaatgcattcattaccttggccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgac 264  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||  || | |||||||  ||||||| |||||       ||||||  |   |||     
T  13334368 atctaatgcattcattaccttggccttccttaagaatttcttatcttcgacatggtattccttagcttctttaatcattttttcaatttctaacattgat 13334269  T
Q  265 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 364  Q
    ||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| ||| |||| ||| ||||||||||| || | |||||    
T  13334268 aacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaaccgtcaggatgccattttcatcaatggaaaagc 13334169  T
Q  365 at 366  Q
    ||    
T  13334168 at 13334167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 392
Target Start/End: Complemental strand, 10495374 - 10495147
Alignment:
Q  165 atctaatgcattcattaccttggccttccttaggaatttctcatcttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgac 264  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||  || | |||| ||  ||||||| |||||       ||||||  |   ||||    
T  10495374 atctaatgcactcattaccttggccttccttaagaatttcatatcttcgacatggtatttcttagcttctttaatcatttttttaatttctaacattgac 10495275  T
Q  265 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 364  Q
    ||||||||||||||||| || || |||||| ||||  ||||||| || ||| | |||||  ||| |||||||| ||| ||||||||||| || | |||||    
T  10495274 aacctttctttgtcattagtaatggtgatcgcgttcatattgcctgtagatatatccttagcagtaacagtcaggatgccattttcatcaatggaaaagc 10495175  T
Q  365 atctttcaaaggtctggccacggggacc 392  Q
    ||   || |||| ||||||||| |||||    
T  10495174 atacctccaagggctggccacgaggacc 10495147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 17259498 - 17259599
Alignment:
Q  265 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 364  Q
    |||||| ||||||||||||||||||| ||||| ||  || ||||||||||| | ||| |  ||||||| ||||  |||||||||| ||||||| ||||||    
T  17259498 aaccttcctttgtcattggttattgtaatctcattcttactgccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgatatcaaagc 17259597  T
Q  365 at 366  Q
    ||    
T  17259598 at 17259599  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8586873 - 8586787
Alignment:
Q  1 ttcagataatcctcaagaacatccacttcattcccctggttcttctcatgaagcaaatctttagccaccgtaattgcatgattgatc 87  Q
    ||||||| |||| |||||||||| |  |||||| ||||||| |||| || |||||||| | ||||||  ||||||||||||||||||    
T  8586873 ttcagatgatccacaagaacatctatgtcattctcctggttattcttatcaagcaaatttgtagccattgtaattgcatgattgatc 8586787  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 6788775 - 6788870
Alignment:
Q  263 acaacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 358  Q
    ||||||||||||||| ||||||||| || ||||| ||  ||||||| |||||| ||||  |  ||||||| ||||  |||||||||||||| ||||    
T  6788775 acaacctttctttgtaattggttatggtaatctcattcatattgcccgtggatttttcagtagcagaaacggtcaaaataccattttcatcaatag 6788870  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 17267201 - 17267302
Alignment:
Q  265 aacctttctttgtcattggttattgtgatctcgtttgtattgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatagcaaagc 364  Q
    |||||| ||||||||||||||||||| ||||| ||  || | ||||||||| | ||| |  ||||||| ||||  |||||||||| ||||| | ||||||    
T  17267201 aaccttcctttgtcattggttattgtaatctcattcttactaccagtggatttgtccatagcagaaactgtcaaaataccattttgatcgacatcaaagc 17267300  T
Q  365 at 366  Q
    ||    
T  17267301 at 17267302  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 109 - 350
Target Start/End: Original strand, 30774361 - 30774602
Alignment:
Q  109 agctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttctcat 208  Q
    |||||||| || || | |||| |||||||| |||||||||| ||||||||||||  ||||||||||||||||||| | | ||||||||||||||||||||    
T  30774361 agctttaaatttacgtccttaatctttagaccattcctcaacttgtaaatgcagcaatctaatgcattcattaccatagacttccttaggaatttctcat 30774460  T
Q  209 cttcagcacgatattcctcggcttcttgaatcannnnnnnaatttcatatgctgacaacctttctttgtcattggttattgtgatctcgtttgtattgcc 308  Q
    |||||||||| || ||    |||||||||||||       |||||| | |   || |||||||||||||| |||||||| |||||||| ||  |||||||    
T  30774461 cttcagcacggtactctctagcttcttgaatcattttgttaatttcttctctggataacctttctttgtcgttggttatcgtgatctcattcatattgcc 30774560  T
Q  309 agtggatgtttccttcacagaaacagtcatgataccattttc 350  Q
    ||||||| ||||| |  |||||||| |||  |||||||||||    
T  30774561 agtggatttttccatagcagaaacattcagtataccattttc 30774602  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 358
Target Start/End: Original strand, 35131763 - 35131817
Alignment:
Q  304 ttgccagtggatgtttccttcacagaaacagtcatgataccattttcatcgatag 358  Q
    ||||| |||||| |||||||  ||||||||||||  |||||||||||||||||||    
T  35131763 ttgccggtggatttttccttagcagaaacagtcaaaataccattttcatcgatag 35131817  T

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Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 43743920 - 43744027
Alignment:
Q  104 aagaaagctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaattt 203  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||| |||||||  || |||||||||||||||||||| ||||| ||||| || |||||    
T  43743920 aagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattacattggctttcctaagaaattt 43744019  T
Q  204 ctcatctt 211  Q
    ||||||||    
T  43744020 ctcatctt 43744027  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 43445794 - 43445894
Alignment:
Q  109 agctttaatttaacattcttattctttagagcattcctcaatttgtaaatgc-agtcatctaatgcattcattaccttggccttccttaggaatttctca 207  Q
    ||||||||||||| || ||||||||||| | ||||||||||  ||||||  | | |||||||||||||||||||| ||||||||||| || |||||||||    
T  43445794 agctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattacattggccttcctaagaaatttctca 43445893  T
Q  208 t 208  Q
    |    
T  43445894 t 43445894  T

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Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 28219022 - 28219129
Alignment:
Q  104 aagaaagctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaattt 203  Q
    |||| |||| |||| ||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || |||||||||||||| |||||    
T  28219022 aagacagctgtaatctaatatccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcatgacattggccttccttagaaattt 28219121  T
Q  204 ctcatctt 211  Q
     |||||||    
T  28219122 ttcatctt 28219129  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 12488715 - 12488610
Alignment:
Q  109 agctttaatttaacattcttattctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggc-cttccttaggaatttctca 207  Q
    |||||||||||||||| |||  |||||||||||||| |||  ||||||||||| |  |||||| |||||||||  |||||  ||||||||||||||||||    
T  12488715 agctttaatttaacatccttcctctttagagcattcttcatcttgtaaatgcaatagtctaatccattcattaaattggcttttccttaggaatttctca 12488616  T
Q  208 tcttca 213  Q
    ||||||    
T  12488615 tcttca 12488610  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 28910545 - 28910589
Alignment:
Q  168 taatgcattcattaccttggccttccttaggaatttctcatcttc 212  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||    
T  28910545 taatgcattcattacattggcctttcttagaaatttttcatcttc 28910589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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