View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20974_low_16 (Length: 249)

Name: NF20974_low_16
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20974_low_16
NF20974_low_16
[»] scaffold0290 (1 HSPs)
scaffold0290 (14-240)||(8521-8747)
[»] chr2 (11 HSPs)
chr2 (1-240)||(23178583-23178822)
chr2 (1-240)||(23589840-23590079)
chr2 (14-200)||(6707068-6707258)
chr2 (22-139)||(12853983-12854095)
chr2 (89-135)||(40174616-40174662)
chr2 (14-55)||(23178815-23178856)
chr2 (14-55)||(23590072-23590113)
chr2 (7-50)||(40174703-40174746)
chr2 (83-135)||(14716047-14716099)
chr2 (157-200)||(12853906-12853949)
chr2 (7-64)||(4830599-4830656)
[»] chr6 (2 HSPs)
chr6 (14-240)||(34083200-34083425)
chr6 (83-133)||(18773865-18773915)
[»] chr7 (6 HSPs)
chr7 (14-192)||(14206814-14206999)
chr7 (14-192)||(14215504-14215689)
chr7 (14-133)||(13446514-13446632)
chr7 (27-135)||(43931719-43931827)
chr7 (7-50)||(25532279-25532322)
chr7 (99-135)||(129477-129513)
[»] chr1 (5 HSPs)
chr1 (14-200)||(26055039-26055231)
chr1 (14-75)||(9592380-9592441)
chr1 (7-74)||(34654254-34654321)
chr1 (89-135)||(49140021-49140067)
chr1 (201-237)||(30397493-30397529)
[»] chr3 (5 HSPs)
chr3 (14-200)||(11220441-11220632)
chr3 (7-135)||(32980304-32980433)
chr3 (14-135)||(25585686-25585807)
chr3 (7-67)||(26797454-26797514)
chr3 (7-50)||(8372554-8372597)
[»] chr8 (7 HSPs)
chr8 (14-135)||(37275029-37275150)
chr8 (89-136)||(35945267-35945314)
chr8 (20-64)||(36939957-36940001)
chr8 (88-135)||(34616350-34616397)
chr8 (89-123)||(35945302-35945336)
chr8 (7-43)||(8397203-8397239)
chr8 (107-135)||(39324028-39324056)
[»] chr4 (2 HSPs)
chr4 (14-135)||(44304831-44304953)
chr4 (14-67)||(20827442-20827495)
[»] chr5 (7 HSPs)
chr5 (7-62)||(14212117-14212172)
chr5 (7-56)||(33431887-33431936)
chr5 (7-50)||(1273224-1273267)
chr5 (88-135)||(15857481-15857528)
chr5 (7-50)||(22812324-22812367)
chr5 (88-136)||(1273305-1273353)
chr5 (89-125)||(22812249-22812285)
[»] scaffold0051 (1 HSPs)
scaffold0051 (14-135)||(22269-22385)
[»] scaffold0084 (1 HSPs)
scaffold0084 (94-135)||(11927-11968)
[»] scaffold0046 (1 HSPs)
scaffold0046 (94-135)||(24669-24710)


Alignment Details
Target: scaffold0290 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 8521 - 8747
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||    
T  8521 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataatttttttccctctcttcatcttattccttccaccactt 8620  T
Q  114 cttcatattcatacaaaattcaaggattttatttttataaaaggaacattttattaaataatcaaaccaacattacaaatgggcatacatttccatcatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  8621 cttcatattcatacaaaattcaaggattttatttttataaaaggaacattttattaaataattaaaccaacattacaaatgggcatacatttccatcgtt 8720  T
Q  214 attaccatcttcatccctcttctttgc 240  Q
    |||||||||||||||||||||||||||    
T  8721 attaccatcttcatccctcttctttgc 8747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23178822 - 23178583
Alignment:
Q  1 tatacaattttttatataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||       |||||||||| |||||||    
T  23178822 tatacaatttctgatataatttcaaccattcgattgcaggtccgttatatagaatagtgaaccatcaccacttaatttttttccctctcttcatcttatt 23178723  T
Q  101 ccttccaccacttcttcatattcatacaaaattcaaggattttatttttataaaaggaacattttattaaataatcaaaccaacattacaaatgggcata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  23178722 ccttccaccacttcttcatattcatacaaaattcaaggattttatttttataaaagaaacattttattaaataattaaaccaacattacaaatgggcata 23178623  T
Q  201 catttccatcattattaccatcttcatccctcttctttgc 240  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  23178622 catttccatcattattacaatcttcatccctcttctttgc 23178583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23590079 - 23589840
Alignment:
Q  1 tatacaattttttatataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttatt 100  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||       |||||||||| |||||||    
T  23590079 tatacaatttctgatataatttcaaccattcgattgcaggtccgttatatagaatagtgaaccatcaccacttaatttttttccctctcttcatcttatt 23589980  T
Q  101 ccttccaccacttcttcatattcatacaaaattcaaggattttatttttataaaaggaacattttattaaataatcaaaccaacattacaaatgggcata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  23589979 ccttccaccacttcttcatattcatacaaaattcaaggattttatttttataaaagaaacattttattaaataattaaaccaacattacaaatgggcata 23589880  T
Q  201 catttccatcattattaccatcttcatccctcttctttgc 240  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  23589879 catttccatcattattacaatcttcatccctcttctttgc 23589840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 6707068 - 6707258
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    ||||||||||||||||| |||||||||||| ||| ||||||| |||||||||||||||||||       |||| ||||| |||| ||| ||||||| |||    
T  6707068 atataatttcaaccattagattgcaggtccattaaatacaat-gtgaaccatcaccacataattttttcccct-tcttcatcttcttctttccacccctt 6707165  T
Q  114 cttcatattcatacaaaattcaagga----ttttat----ttttataaaaggaacattttattaaataatcaaaccaacattacaaatgggcata 200  Q
    | ||||||||||||||||||||||||    ||||||    |||||||||| ||||||||||||||| |||  |||||||||||||||||| ||||    
T  6707166 c-tcatattcatacaaaattcaaggaacatttttattttattttataaaaagaacattttattaaagaat-taaccaacattacaaatggacata 6707258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 12854095 - 12853983
Alignment:
Q  22 tcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccacttcttcatat 121  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||||||||||||       ||||   |||||||| ||| ||||||| |||| ||||||    
T  12854095 tcaaccattagattgcaggtccattatatacaatagcgaaccatcaccacataa-ttttttccct---ttcttcttcttctttccaccccttc-tcatat 12854001  T
Q  122 tcatacaaaattcaagga 139  Q
    ||||||||||||||||||    
T  12854000 tcatacaaaattcaagga 12853983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 40174662 - 40174616
Alignment:
Q  89 cttcttcttattccttccaccacttcttcatattcatacaaaattca 135  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||    
T  40174662 cttcatcttattccttccaccacttcttcatattcataccaaattca 40174616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 23178856 - 23178815
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaat 55  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  23178856 atataatttcaaccattcgattgcagatccgttatatacaat 23178815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 23590113 - 23590072
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaat 55  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  23590113 atataatttcaaccattcgattgcagatccgttatatacaat 23590072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 40174746 - 40174703
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatat 50  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  40174746 attttttatatgatttcaaccattcgattgcaggtccattatat 40174703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 14716099 - 14716047
Alignment:
Q  83 ccctctcttcttcttattccttccaccacttcttcatattcatacaaaattca 135  Q
    |||| ||||| |||| |||||||||||| |||||||| |||||||||||||||    
T  14716099 ccctttcttcatctttttccttccaccatttcttcatgttcatacaaaattca 14716047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 12853949 - 12853906
Alignment:
Q  157 gaacattttattaaataatcaaaccaacattacaaatgggcata 200  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||    
T  12853949 gaacattttattaaagaattaaaccaacattacaaatggacata 12853906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 4830656 - 4830599
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatatacaatagtgaacca 64  Q
    |||||| |||| |||||||||||||||||| |||||| || ||||||| | |||||||    
T  4830656 atttttgatatgatttcaaccattcgattgtaggtccattgtatacaacattgaacca 4830599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 34083200 - 34083425
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||       |||||||||| |||| |||| | ||||||||    
T  34083200 atataatttcaaccattcgattgcaggtccattatatacaatagtgaaccatcaccacataatttttt-ccctctcttcatcttcttccgtacaccactt 34083298  T
Q  114 cttcatattcatacaaaattcaaggattttatttttataaaaggaacattttattaaataatcaaaccaacattacaaatgggcatacatttccatcatt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34083299 cttcatattcatacaaaattcaaggattttatttttataaaaggaacattttattaaataattaaaccaacattacaaatgggcatacatttccatcatt 34083398  T
Q  214 attaccatcttcatccctcttctttgc 240  Q
    |||||||||||||||||||||||||||    
T  34083399 attaccatcttcatccctcttctttgc 34083425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 18773865 - 18773915
Alignment:
Q  83 ccctctcttcttcttattccttccaccacttcttcatattcatacaaaatt 133  Q
    |||| ||||| |||| ||||||||| |||||||||||||||||||||||||    
T  18773865 ccctttcttcatcttcttccttccatcacttcttcatattcatacaaaatt 18773915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 14206814 - 14206999
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataa-nnnnnnnccctctcttcttcttattccttccaccact 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||| |||| ||||||||||||||    
T  14206814 atataatttcaaccattcgattgcaggtccattatatacaatagtgaaccatcaccacataattttccttccctctcttcatcttcttccttccaccact 14206913  T
Q  113 tcttcatattcatacaaaattcaagga------ttttatttttataaaaggaacattttattaaataatcaaaccaacattacaaa 192  Q
    |||| ||||||||||||||||||||||      |||| | || |||||||||||||||||||||| ||| ||||||||||||||||    
T  14206914 tcttgatattcatacaaaattcaaggaacatttttttttgttgataaaaggaacattttattaaagaattaaaccaacattacaaa 14206999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 14215504 - 14215689
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataa-nnnnnnnccctctcttcttcttattccttccaccact 112  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||| |||| ||||||||||||||    
T  14215504 atataatttcaaccattcgattgcaggtccattatatacaatagtgaaccatcaccacataattttccttccctctcttcatcttcttccttccaccact 14215603  T
Q  113 tcttcatattcatacaaaattcaagga------ttttatttttataaaaggaacattttattaaataatcaaaccaacattacaaa 192  Q
    |||| ||||||||||||||||||||||      |||| | || |||||||||||||||||||||| ||| ||||||||||||||||    
T  14215604 tcttgatattcatacaaaattcaaggaacatttttttttgttgataaaaggaacattttattaaagaattaaaccaacattacaaa 14215689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 13446632 - 13446514
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    |||| |||||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||        ||||||||| ||||  ||||||||||||||    
T  13446632 atatgatttcaaccattcgattgcatgtccaatatatacaacagtgaaccatcaccacataattttttt-cctctcttcatcttcatccttccaccactt 13446534  T
Q  114 cttcatattcatacaaaatt 133  Q
    | ||||||||||||||||||    
T  13446533 catcatattcatacaaaatt 13446514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 43931827 - 43931719
Alignment:
Q  27 cattcgattgcagg-tccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccacttcttcatattcat 125  Q
    |||||||||||| | ||| ||||| |||||||||||||||||||||||||       |||||||||| |||| ||||||||||||||||||||| |||||    
T  43931827 cattcgattgcaagatccattatacacaatagtgaaccatcaccacataatttttt-ccctctcttcatcttcttccttccaccacttcttcatgttcat 43931729  T
Q  126 acaaaattca 135  Q
    ||| ||||||    
T  43931728 acataattca 43931719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 25532279 - 25532322
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatat 50  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||    
T  25532279 atttttgatatgatttcaaccattcgattgcaggtccattatat 25532322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 129513 - 129477
Alignment:
Q  99 ttccttccaccacttcttcatattcatacaaaattca 135  Q
    |||||||||||| |||||||||||||||| |||||||    
T  129513 ttccttccaccaattcttcatattcataccaaattca 129477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 26055039 - 26055231
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||       |||| ||||| |||| ||||||||||| |||    
T  26055039 atataatttcaaccattagattgcaggtctattatatacaatagtgaaccatcaccacataa-ttttttccctttcttcatcttcttccttccacccctt 26055137  T
Q  114 cttcatattcatacaaaattcaagga----ttttat----ttttataaaaggaacattttattaaataatcaaaccaacattacaaatgggcata 200  Q
    | ||||||||||||||||||||||||    ||||||    |||||||||| ||| ||||||||||| ||| ||||||||||||||||||| ||||    
T  26055138 c-tcatattcatacaaaattcaaggaacatttttattttattttataaaaagaatattttattaaagaattaaaccaacattacaaatggacata 26055231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 9592380 - 9592441
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataa 75  Q
    |||| ||||||| ||||||||||||||| | | ||||||||| |||||||||||||||||||    
T  9592380 atatgatttcaatcattcgattgcaggttcatcatatacaatggtgaaccatcaccacataa 9592441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 34654321 - 34654254
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacata 74  Q
    |||||| |||| ||||||||||||||||||||||||| || ||||||| | ||||||| || ||||||    
T  34654321 atttttaatatgatttcaaccattcgattgcaggtccattgtatacaacaatgaaccaacaacacata 34654254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 49140021 - 49140067
Alignment:
Q  89 cttcttcttattccttccaccacttcttcatattcatacaaaattca 135  Q
    |||| |||| ||||||||||||||||||||||||||||  |||||||    
T  49140021 cttcatcttcttccttccaccacttcttcatattcatatcaaattca 49140067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 30397493 - 30397529
Alignment:
Q  201 catttccatcattattaccatcttcatccctcttctt 237  Q
    |||||||||||||||||||||| || |||||||||||    
T  30397493 catttccatcattattaccatcctcgtccctcttctt 30397529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 11220632 - 11220441
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    |||||||||||||||||  ||||||||||| ||||||||| |||||||||||||||||||||       |||| ||||| |||| ||||||||||| |||    
T  11220632 atataatttcaaccattatattgcaggtccattatatacagtagtgaaccatcaccacataa-ttttttccctttcttcatcttcttccttccacccctt 11220534  T
Q  114 cttcatattcatacaaaattcaagga-------ttttatttttataaaaggaacattttattaaataatcaaaccaacattacaaatgggcata 200  Q
    | ||||||||||||||||||||||||       ||||  |||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||    
T  11220533 c-tcatattcatacaaaattcaaggaacatttttttttattttataaaaagaacattttattaaagaattaaaccaacattacaaatggacata 11220441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 32980433 - 32980304
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataa-nnnnnnnccctctcttcttcttattccttc 105  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||| |||| |||||||    
T  32980433 atttttgatatgatttcaaccattcgattgcaggtccattatatacaatagtgaaccatcaccacataattttttttccctctcttcatctttttccttc 32980334  T
Q  106 caccacttcttcatattcatacaaaattca 135  Q
    |||| ||| ||||| || ||||||||||||    
T  32980333 caccgctttttcatgtttatacaaaattca 32980304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 25585807 - 25585686
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattcc-ttccaccact 112  Q
    |||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||       |||||||||| |||| |||| ||||||||||    
T  25585807 atatgatttgaaccattcgattgcagatccattatatacaatagtgaaccatcaccacataa-ttttttccctctcttcatcttcttcctttccaccact 25585709  T
Q  113 tcttcatattcatacaaaattca 135  Q
    ||||||| |||||||| ||||||    
T  25585708 tcttcatgttcatacataattca 25585686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 26797454 - 26797514
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatca 67  Q
    |||||| ||||||||||||||||| |||||||||||| || ||||||| | || |||||||    
T  26797454 atttttgatataatttcaaccatttgattgcaggtccattgtatacaacaatggaccatca 26797514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 8372597 - 8372554
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatat 50  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||    
T  8372597 atttttgatatgatttcaaccattcgattgcaggtccattatat 8372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 37275029 - 37275150
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    |||| |||||||||||||||||||| ||||  ||||||||| ||||||||||||||||||||       |||||||||| |||| |||||||||||||||    
T  37275029 atatgatttcaaccattcgattgcatgtccaatatatacaacagtgaaccatcaccacataatttttttccctctcttcatcttcttccttccaccactt 37275128  T
Q  114 cttcatattcatacaaaattca 135  Q
    ||||||||||||||||||||||    
T  37275129 cttcatattcatacaaaattca 37275150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 35945314 - 35945267
Alignment:
Q  89 cttcttcttattccttccaccacttcttcatattcatacaaaattcaa 136  Q
    ||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  35945314 cttcttcatattccttccaccacttcttcatattcatgccaaattcaa 35945267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 36940001 - 36939957
Alignment:
Q  20 tttcaaccattcgattgcaggtccgttatatacaatagtgaacca 64  Q
    |||||||||||||||||||||||| || |||| ||||||||||||    
T  36940001 tttcaaccattcgattgcaggtccattgtatataatagtgaacca 36939957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 34616350 - 34616397
Alignment:
Q  88 tcttcttcttattccttccaccacttcttcatattcatacaaaattca 135  Q
    ||||| |||| ||||||| ||||||||||||||||||||| |||||||    
T  34616350 tcttcatcttcttccttctaccacttcttcatattcataccaaattca 34616397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 35945336 - 35945302
Alignment:
Q  89 cttcttcttattccttccaccacttcttcatattc 123  Q
    |||| ||||||||||||||||||||||||||||||    
T  35945336 cttcatcttattccttccaccacttcttcatattc 35945302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 8397239 - 8397203
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtcc 43  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  8397239 atttttgatataatttcaaccatttgattgcaggtcc 8397203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 39324028 - 39324056
Alignment:
Q  107 accacttcttcatattcatacaaaattca 135  Q
    |||||||||||||||||||||||||||||    
T  39324028 accacttcttcatattcatacaaaattca 39324056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 44304953 - 44304831
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataa-nnnnnnnccctctcttcttcttattccttccaccact 112  Q
    |||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||        |||||||||| |||| ||||||||||| ||    
T  44304953 atatgatttcaacaattcgattgtaggtccattatatacaatagtgaaccatcaccacataattttttctccctctcttcatctttttccttccaccgct 44304854  T
Q  113 tcttcatattcatacaaaattca 135  Q
    | ||||| |||||||||||||||    
T  44304853 ttttcatgttcatacaaaattca 44304831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 20827495 - 20827442
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatca 67  Q
    ||||||||| ||||||| ||||||| || | |||||| ||||||||||||||||    
T  20827495 atataattttaaccatttgattgcaagttcattatatccaatagtgaaccatca 20827442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 14212172 - 14212117
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatatacaatagtgaac 62  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| |||| |||||||    
T  14212172 attttttatgtaatttcaaccattcgattgcaggtccattatacacaacagtgaac 14212117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 33431887 - 33431936
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatatacaata 56  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||||||||    
T  33431887 attttttatatgatttcaatcattcgattgcaggtccattatatacaata 33431936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 1273224 - 1273267
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatat 50  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||    
T  1273224 atttttgatatgatttcaaccattcgattgcaggtccattatat 1273267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 15857528 - 15857481
Alignment:
Q  88 tcttcttcttattccttccaccacttcttcatattcatacaaaattca 135  Q
    ||||| |||| ||||||| ||||||||||||||||||||| |||||||    
T  15857528 tcttcatcttcttccttctaccacttcttcatattcataccaaattca 15857481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 22812367 - 22812324
Alignment:
Q  7 attttttatataatttcaaccattcgattgcaggtccgttatat 50  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||    
T  22812367 atttttgatatgatttcaaccattcgattgcaggtccattatat 22812324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 1273305 - 1273353
Alignment:
Q  88 tcttcttcttattccttccaccacttcttcatattcatacaaaattcaa 136  Q
    ||||| |||| |||||||||||||||||| |||||||| | ||||||||    
T  1273305 tcttcatcttcttccttccaccacttctttatattcatgccaaattcaa 1273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 22812285 - 22812249
Alignment:
Q  89 cttcttcttattccttccaccacttcttcatattcat 125  Q
    |||| |||| |||||||||||||||||||||||||||    
T  22812285 cttcatcttcttccttccaccacttcttcatattcat 22812249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 22269 - 22385
Alignment:
Q  14 atataatttcaaccattcgattgcaggtccgttatatacaatagtgaaccatcaccacataannnnnnnccctctcttcttcttattccttccaccactt 113  Q
    |||| ||||| |||||| |||| ||||| | |||||||||| |||||||||||||||  |||       |||||||||| |||| ||||||||||||       
T  22269 atatgatttccaccatt-gattccaggtacattatatacaacagtgaaccatcaccatgtaatttttt-ccctctcttcatcttcttccttccacca--- 22363  T
Q  114 cttcatattcatacaaaattca 135  Q
    ||||||||||||||||||||||    
T  22364 cttcatattcatacaaaattca 22385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 11927 - 11968
Alignment:
Q  94 tcttattccttccaccacttcttcatattcatacaaaattca 135  Q
    |||| ||||||||||||||||||||||||  |||||||||||    
T  11927 tcttcttccttccaccacttcttcatatttgtacaaaattca 11968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 24710 - 24669
Alignment:
Q  94 tcttattccttccaccacttcttcatattcatacaaaattca 135  Q
    |||| ||||||||||||||||||||||||  |||||||||||    
T  24710 tcttcttccttccaccacttcttcatattggtacaaaattca 24669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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