View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20974_low_19 (Length: 224)

Name: NF20974_low_19
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20974_low_19
NF20974_low_19
[»] chr2 (1 HSPs)
chr2 (12-202)||(36840901-36841091)
[»] chr4 (2 HSPs)
chr4 (12-202)||(18343127-18343316)
chr4 (89-135)||(22101579-22101625)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-193)||(164053-164233)
[»] chr3 (1 HSPs)
chr3 (30-195)||(18375002-18375165)
[»] scaffold1779 (1 HSPs)
scaffold1779 (15-144)||(395-524)
[»] chr7 (1 HSPs)
chr7 (41-193)||(46634306-46634463)
[»] scaffold0702 (1 HSPs)
scaffold0702 (12-64)||(7150-7202)
[»] chr8 (1 HSPs)
chr8 (12-64)||(35195235-35195287)
[»] chr5 (1 HSPs)
chr5 (12-60)||(10258389-10258437)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 36841091 - 36840901
Alignment:
Q  12 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36841091 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 36840992  T
Q  112 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgttggtttc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840991 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgttggtttc 36840901  T

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Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 18343316 - 18343127
Alignment:
Q  12 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18343316 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 18343217  T
Q  112 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgttggtttc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18343216 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaa-aaaatggtaattgttggtttc 18343127  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
Q  89 ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca 135  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  22101625 ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca 22101579  T

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Target: scaffold0002 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 164053 - 164233
Alignment:
Q  12 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  164053 gaatattgggtagctgtcgttaaacccgacaaaatactttatgaaatgggcggggtcccagaaaatatagctagaaaggctatttcaatagcggcatcca 164152  T
Q  112 aaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt 193  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  164153 aaatgcctataagaactcaattcattctttcagaataatcattagatcgaaataggtctttagtat-aaaaaaatgataatt 164233  T

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Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 18375002 - 18375165
Alignment:
Q  30 gttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactc 129  Q
    |||||||| | | ||||||||||||||||||| ||  ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  18375002 gttaaacctgactaaatactttatgaaatgggggg--tcccaaaaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactc 18375099  T
Q  130 aattcattctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgt 195  Q
    |||| ||||||| |||||||  ||||||||||||||| |||||| |||||||||||||||||||||    
T  18375100 aatttattctttgagaataactattagaacgaaatagatctttaatatgaaaaaaatggtaattgt 18375165  T

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Target: scaffold1779 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 395 - 524
Alignment:
Q  15 tattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaa 114  Q
    ||||||||||||||||||||||| |||| |||||||||||||||| | || ||  | ||||||||||| ||||||||||||||||||||||| || ||||    
T  395 tattgggtagctgtcgttaaaccgggcagaatactttatgaaatgagtggagtagccgaaaatatagccagaaaggctatttcaatagcggcgtcaaaaa 494  T
Q  115 tgcctatacgaactcaattcattctttcag 144  Q
    ||||||||  ||| ||||||||| ||||||    
T  495 tgcctataaaaacgcaattcattatttcag 524  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 193
Target Start/End: Complemental strand, 46634463 - 46634306
Alignment:
Q  41 caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc 134  Q
    ||||||| ||||||||||||||||  | ||| |||| |||||||||||| |||||||||||||| ||     |||||| |||||||||| |||  ||| |    
T  46634463 caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c 46634365  T
Q  135 attctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt 193  Q
    |||||||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||    
T  46634364 attctttcagaagaataattagaaccaaatatgtctttagtataaaaaaaatggtaatt 46634306  T

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Target: scaffold0702 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 7150 - 7202
Alignment:
Q  12 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7150 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 7202  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 35195235 - 35195287
Alignment:
Q  12 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35195235 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg 35195287  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 10258389 - 10258437
Alignment:
Q  12 gaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg 60  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  10258389 gaatattgggtagctgtcattaaatccggtaaaatactttatgaaatgg 10258437  T

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