View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20974_low_2 (Length: 494)
Name: NF20974_low_2
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20974_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 9e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 4700819 - 4700532
Alignment:
| Q |
13 |
aatatgtgacggaggtcttattcataagagacatttagattaacaaaaatttatgtattcaatctaaattttaaactaaatacatcaatttatattgatc |
112 |
Q |
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| T |
4700819 |
aatatgtgacagaggtcttattcataagagacatctggattaacaaaaatttatgtattcggtctaaattttgagctaaatacatcaatttatattaatc |
4700720 |
T |
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| Q |
113 |
taaacgtctcttataaaaaagccaggatgaaatatcatattttatcataatttaattgttgatgaactaatagatatgacaaatgattgaattcg----- |
207 |
Q |
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| T |
4700719 |
taaacgtctcttataaaaaagacaggatgaaatatcatattttatcataatttaattgttgatgaactaatagatatgacaaatgattgaattcgttttt |
4700620 |
T |
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| Q |
208 |
---nnnnnnngtctatttatagttctaattatttcgtagaatttattaacatacaggttaatgtagtggctcatcaactagctcgaatg |
293 |
Q |
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| T |
4700619 |
ttttttttttttctatttatagttctaattatttcgtagaatttattaaca-acgagttaatgtagtggctcatcaactagctcgaatg |
4700532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 280 - 477
Target Start/End: Complemental strand, 4700513 - 4700315
Alignment:
| Q |
280 |
aactagctcgaatggctgcatatacgatttatgctcgtgattttgatgctatacatgatgtatgtagctcaaaagtaagtatgaaa-gttttacggtatt |
378 |
Q |
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|||||||||||||| ||||||| || | |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
4700513 |
aactagctcgaatgactgcatacacaacttatgctcatgattttgatgatatacatgatgtttgtagctcaaaagtaagtatgaaaagttttacggtatt |
4700414 |
T |
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| Q |
379 |
caaaaggacttgaatgatattatgatgttagacaaagtttattataatcttaagtttgaaatagtttgtgagtggttcataaagtttgttcaatattaa |
477 |
Q |
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| T |
4700413 |
caaaaggacttgaatgatattatgatgttcgacaaagtttattataatcttaagtttgaaataatttgtgagtggttcataaagtttgttcaatattaa |
4700315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 28017990 - 28017938
Alignment:
| Q |
77 |
taaattttaaactaaatacatcaatttatattgatctaaacgtctcttataaa |
129 |
Q |
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| T |
28017990 |
taaattttaaactaaatacattaatttttattgattcaaatatctcttataaa |
28017938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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