View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20974_low_7 (Length: 416)
Name: NF20974_low_7
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20974_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 164 - 401
Target Start/End: Complemental strand, 19130824 - 19130586
Alignment:
| Q |
164 |
ttggcactattgttgcaagagtaagggtctatctcccactccctcactctctatctacattttcataattgagctattaattttcatgataatgatttta |
263 |
Q |
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| T |
19130824 |
ttggcactattgttgcaagagtaagggtctatctcccactccctcactctctatctacattctcataattgagctattaattttcatgataatgatttta |
19130725 |
T |
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| Q |
264 |
actt--ttttctctttctttcgcgctttcagtaaattgatttggttaatggaatttttaactaatcacccattgtgtgtttgatacagctccatcttcaa |
361 |
Q |
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| T |
19130724 |
acttttttttttctttctttcgcgctttcagtaaattgatatggttaatggaatttttaactaatc-cccattgtgtgtttgatacaggtccatcttcaa |
19130626 |
T |
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| Q |
362 |
acaatatcatttcttaccaattccaacacataaaagcttt |
401 |
Q |
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| T |
19130625 |
acaaaatcatttcttaccaattccaacacataaatgcttt |
19130586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 19143189 - 19143023
Alignment:
| Q |
1 |
cagatagataagctaacttggcgtcctcataaaaaaggtattttttcaatgaaaagtgcttatcgctctatcaagcaacggaaagattctgataatccac |
100 |
Q |
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| T |
19143189 |
cagatggataagctaacttggcgtcctcacaaaagaggtattttttcaatgaaaagtgcttatcgctctatcaagcaacgaaaagattctgataatccac |
19143090 |
T |
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| Q |
101 |
aagt-atctatgcataataatccatctcctttgtggtcgaaatgaagaggacaaaaaatgtttattg |
166 |
Q |
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| T |
19143089 |
aagtaatctatgcataataatccatcttctttgtggtcgaaatgaagaggacaaaaaatgtttattg |
19143023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 18927738 - 18927646
Alignment:
| Q |
50 |
tgaaaagtgcttatcgctctatcaagcaacggaaagattctgataatccacaagtatctatgcataataatccatctcctttgtggtcgaaat |
142 |
Q |
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| T |
18927738 |
tgaaaattgctcatcaatctatcaagcaatgggaagattatgataatccacaggtatctatgcataataatccatctccattgtggtcaaaat |
18927646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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