View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20974_low_8 (Length: 384)

Name: NF20974_low_8
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20974_low_8
NF20974_low_8
[»] chr7 (4 HSPs)
chr7 (99-357)||(20074270-20074529)
chr7 (29-107)||(20073998-20074076)
chr7 (29-62)||(2440073-2440106)
chr7 (28-60)||(39262778-39262810)
[»] chr8 (7 HSPs)
chr8 (227-368)||(31210679-31210818)
chr8 (28-98)||(31206925-31206997)
chr8 (26-62)||(9885365-9885401)
chr8 (248-287)||(5957306-5957345)
chr8 (29-62)||(4970050-4970083)
chr8 (251-368)||(30390160-30390275)
chr8 (28-60)||(45239360-45239392)
[»] chr4 (2 HSPs)
chr4 (100-181)||(11655206-11655287)
chr4 (100-181)||(16033280-16033361)
[»] chr2 (2 HSPs)
chr2 (100-181)||(7393998-7394079)
chr2 (100-181)||(19583029-19583110)
[»] chr6 (2 HSPs)
chr6 (250-362)||(14949528-14949639)
chr6 (28-60)||(26846230-26846262)
[»] chr3 (4 HSPs)
chr3 (247-325)||(11589381-11589459)
chr3 (26-60)||(39482202-39482236)
chr3 (28-62)||(50719202-50719236)
chr3 (28-62)||(50793612-50793646)
[»] chr1 (1 HSPs)
chr1 (251-361)||(2355964-2356071)
[»] chr5 (2 HSPs)
chr5 (31-60)||(6702120-6702149)
chr5 (28-60)||(37340385-37340417)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 99 - 357
Target Start/End: Original strand, 20074270 - 20074529
Alignment:
Q  99 ataaataaatgtgattgttagattgctgtgcagaagtactcttgtcagccctattgtatttaattttgaagttaacactaagccaagctccttnnnnnnn 198  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||           
T  20074270 ataaataaatgtgattgttagattactgtgcataagtactcttgtcagccctattatatttaattttaaagttaacaataagccaagctccttaaaaaaa 20074369  T
Q  199 nnnnnnnnnnnnnn-taagccaagcattcggccgccactttgtagtctaagggagtggatcctctccggtgaagatccctcctgttttctgtagtgccct 297  Q
                   |||||||||||   |||||||||| | |||||||||||||||||||||||||| || |||||||||| ||||||| ||| |||||    
T  20074370 ataaaaaataaaaaataagccaagcacctggccgccactctatagtctaagggagtggatcctctccgatggagatccctccggttttctatagcgccct 20074469  T
Q  298 actatccacctttaattatactctctcttattttttgatattacaaacacattaactcac 357  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  20074470 actatccacctttaattatattctctcttattttttgatattacaaacacattatctcac 20074529  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 20073998 - 20074076
Alignment:
Q  29 actagaacgccgacccgtgcaccgcacgggtcatgtcgactaaaacaagttgcaaagtgatataccatatataaataaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20073998 actagaacgccgacccgtgcaccgcacgggtcatgtcgactaaaacaacttgcaaagtgatataccatatataaataaa 20074076  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 2440106 - 2440073
Alignment:
Q  29 actagaacgccgacccgtgcaccgcacgggtcat 62  Q
    |||||||||||||||||||| |||||||||||||    
T  2440106 actagaacgccgacccgtgcgccgcacgggtcat 2440073  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 39262778 - 39262810
Alignment:
Q  28 aactagaacgccgacccgtgcaccgcacgggtc 60  Q
    ||||||||||||||||||||| |||||||||||    
T  39262778 aactagaacgccgacccgtgcgccgcacgggtc 39262810  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 227 - 368
Target Start/End: Original strand, 31210679 - 31210818
Alignment:
Q  227 ggccgccactttgtagtctaagggagtggatcctctccggtgaagatccctcctgttttctgtagtgccctactatccacctttaattatactctctctt 326  Q
    ||||||||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||||||||  |||||||    
T  31210679 ggccgccacttcgtagtctaagagagtggatcctcttcggtggagatccctcctgttttctgcagtgccctactatccatctttaattata--ctctctt 31210776  T
Q  327 attttttgatattacaaacacattaactcacctatttaatgg 368  Q
     || ||||||||||||||||||||| ||||||||||||||||    
T  31210777 gttgtttgatattacaaacacattatctcacctatttaatgg 31210818  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 31206925 - 31206997
Alignment:
Q  28 aactagaacgccgacccgtgcaccgcacgggtcatgtcgactaaa--acaagttgcaaagtgatataccatat 98  Q
    ||||||||||||| || ||||| || |||||| ||||||||||||  |||| |||||||||||||||||||||    
T  31206925 aactagaacgccgtcctgtgcatcgtacgggttatgtcgactaaaacacaacttgcaaagtgatataccatat 31206997  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 9885365 - 9885401
Alignment:
Q  26 ttaactagaacgccgacccgtgcaccgcacgggtcat 62  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9885365 ttaactagaacgccgacccgtgcgccgcacgggtcat 9885401  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 287
Target Start/End: Complemental strand, 5957345 - 5957306
Alignment:
Q  248 gggagtggatcctctccggtgaagatccctcctgttttct 287  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  5957345 gggagtggatcctctccggtggagatctctcctgttttct 5957306  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 4970083 - 4970050
Alignment:
Q  29 actagaacgccgacccgtgcaccgcacgggtcat 62  Q
    |||||||||||||||||||| |||||||||||||    
T  4970083 actagaacgccgacccgtgcgccgcacgggtcat 4970050  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 30390160 - 30390275
Alignment:
Q  251 agtggatcctctccggtgaagatccctcctgttttctgtagtgccctactatccacctttaattatactctctcttattttttgatattacaaacacatt 350  Q
    ||||||||||||||  || ||||||||| ||||||||   |||||  || ||||||||||||||| ||||||||||   ||||  ||||||| |||||||    
T  30390160 agtggatcctctcca-tggagatccctcatgttttctccggtgcctaacaatccacctttaattacactctctctt-ccttttattattacagacacatt 30390257  T
Q  351 aactcacctatttaatgg 368  Q
       |||||||||||||||    
T  30390258 ctatcacctatttaatgg 30390275  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 45239360 - 45239392
Alignment:
Q  28 aactagaacgccgacccgtgcaccgcacgggtc 60  Q
    ||||||||||||||||||||| |||||||||||    
T  45239360 aactagaacgccgacccgtgcgccgcacgggtc 45239392  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 11655206 - 11655287
Alignment:
Q  100 taaataaatgtgattgttagattgctgtgcagaagtactcttgtcagccctattgtatttaattttgaagttaacactaagc 181  Q
    ||||||||||||| ||||| ||| |||||||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||    
T  11655206 taaataaatgtgactgttaaattactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagc 11655287  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 16033280 - 16033361
Alignment:
Q  100 taaataaatgtgattgttagattgctgtgcagaagtactcttgtcagccctattgtatttaattttgaagttaacactaagc 181  Q
    ||||||||||||| ||||| ||| |||||||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||    
T  16033280 taaataaatgtgactgttaaattactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagc 16033361  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 7394079 - 7393998
Alignment:
Q  100 taaataaatgtgattgttagattgctgtgcagaagtactcttgtcagccctattgtatttaattttgaagttaacactaagc 181  Q
    ||||||||||||| ||||| ||| |||||||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||    
T  7394079 taaataaatgtgactgttaaattactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagc 7393998  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 19583029 - 19583110
Alignment:
Q  100 taaataaatgtgattgttagattgctgtgcagaagtactcttgtcagccctattgtatttaattttgaagttaacactaagc 181  Q
    ||||||||||||| ||||| ||| |||||||||| ||||| ||| |||| ||||||||||||||||| |||||||| |||||    
T  19583029 taaataaatgtgactgttaaattactgtgcagaaatactcatgttagccttattgtatttaattttgcagttaacaataagc 19583110  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 362
Target Start/End: Complemental strand, 14949639 - 14949528
Alignment:
Q  250 gagtggatcctctccggtgaagatccctcctgttttctgtagtgccctactat--ccacctttaattatactctctcttattttttgatattacaaacac 347  Q
    ||||||||||||||  ||| ||||||||||| | ||||| ||||||| |||||  ||||||||||||| |||||| |||  |||||||||||||||||||    
T  14949639 gagtggatcctctctcgtggagatccctcctatcttctggagtgccccactatatccacctttaattacactctc-ctt--tttttgatattacaaacac 14949543  T
Q  348 attaactcacctatt 362  Q
    |||| ||||| ||||    
T  14949542 attatctcacttatt 14949528  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 26846262 - 26846230
Alignment:
Q  28 aactagaacgccgacccgtgcaccgcacgggtc 60  Q
    |||||||||||||||||||||||||||||||||    
T  26846262 aactagaacgccgacccgtgcaccgcacgggtc 26846230  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 325
Target Start/End: Complemental strand, 11589459 - 11589381
Alignment:
Q  247 agggagtggatcctctccggtgaagatccctcctgttttctgtagtgccctactatccacctttaattatactctctct 325  Q
    ||||||||||||||||||| || ||||| |||||||||||||  ||| || |  ||||||||||||||| |||||||||    
T  11589459 agggagtggatcctctccgatggagatctctcctgttttctgctgtggcccatcatccacctttaattacactctctct 11589381  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 39482202 - 39482236
Alignment:
Q  26 ttaactagaacgccgacccgtgcaccgcacgggtc 60  Q
    |||||||||||||||||||||||| ||||||||||    
T  39482202 ttaactagaacgccgacccgtgcatcgcacgggtc 39482236  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 50719236 - 50719202
Alignment:
Q  28 aactagaacgccgacccgtgcaccgcacgggtcat 62  Q
    ||||||||||||||||||||| |||||||||||||    
T  50719236 aactagaacgccgacccgtgcgccgcacgggtcat 50719202  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 50793612 - 50793646
Alignment:
Q  28 aactagaacgccgacccgtgcaccgcacgggtcat 62  Q
    ||||||||||||||||||||| |||||||||||||    
T  50793612 aactagaacgccgacccgtgcgccgcacgggtcat 50793646  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 361
Target Start/End: Complemental strand, 2356071 - 2355964
Alignment:
Q  251 agtggatcctctccggtgaagatccctcctgttttctgtag-tgccctactatccacctttaattatactctctcttattttttgatattacaaacacat 349  Q
    |||| ||||||||||||| ||||||||||||||||||| || | ||| |||||||| |||||||||    |  | || |||||  |||||||||||||||    
T  2356071 agtgaatcctctccggtggagatccctcctgttttctgcagctcccccactatccagctttaatta----catttttttttttatatattacaaacacat 2355976  T
Q  350 taactcacctat 361  Q
    || |||||||||    
T  2355975 tatctcacctat 2355964  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 6702149 - 6702120
Alignment:
Q  31 tagaacgccgacccgtgcaccgcacgggtc 60  Q
    ||||||||||||||||||||||||||||||    
T  6702149 tagaacgccgacccgtgcaccgcacgggtc 6702120  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 37340417 - 37340385
Alignment:
Q  28 aactagaacgccgacccgtgcaccgcacgggtc 60  Q
    ||||||||||||||||||||| |||||||||||    
T  37340417 aactagaacgccgacccgtgccccgcacgggtc 37340385  T

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