View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20974_low_9 (Length: 325)
Name: NF20974_low_9
Description: NF20974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20974_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 29194227 - 29194538
Alignment:
| Q |
1 |
cttctgatattcttttcctttgatgcagaaatacatggaagattcttccttccaaggtagcactccctctttcttattgcttctctctcttacattgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29194227 |
cttctgatattcttttcctttgatgcagaaatacatggaagattcttccttccaaggtagcactccctctttcttatttcttctctctcttacattgatt |
29194326 |
T |
|
| Q |
101 |
aaacatgtcgcgccattttatatatttagttcttgtcnnnnnnnctcttcaagtctagagtggaacatgaatgaaaaattctgaatcttctttggcttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29194327 |
aaacatgtcgcgccattttatatatttagttcttgtctttttttctcttcaattctagagtggaacatgaatgaaaaattctgaatcttctttggcttga |
29194426 |
T |
|
| Q |
201 |
atataaaatttttgatacatcctgtactttttatgctccttaaatgtgtataaaagttgttaagcaggcttctgatgcattgcttgtgctatatccattt |
300 |
Q |
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|||| ||| |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29194427 |
atat-aaagttttgatatatcatgtactttttatgttccttaaatgtgtataaaagttgttaagcacgcttctgatgcattgcttgtgctatatccattt |
29194525 |
T |
|
| Q |
301 |
tttggttaatatt |
313 |
Q |
| |
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||||||||||||| |
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| T |
29194526 |
tttggttaatatt |
29194538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 26659082 - 26659387
Alignment:
| Q |
5 |
tgatattcttttcctttgatgcagaaatacatggaagattcttccttccaaggtagcactccctctttcttattgcttctctctcttacattgattaaac |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
26659082 |
tgatattcttttcctttgatgcagaaatacatggaagattcttccttccaaggtagcactccctctttcttattgtttctctctcttaccttgattaaac |
26659181 |
T |
|
| Q |
105 |
atgtcgcgccattttatatatttagttcttg-tcnnnnnnnctcttcaagtctagagtggaacatgaatgaaaaattctg-----------------aat |
186 |
Q |
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|||| ||||||||||| ||||||||||||| | |||||||| ||||||||| |||||||||||||||||||| ||| |
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| T |
26659182 |
gtgtcacgccattttatttatttagttcttgttttttttctctcttcaattctagagtgaaacatgaatgaaaaattctgaatcctgaaaaattcttaat |
26659281 |
T |
|
| Q |
187 |
cttctttggcttgaatataaaatttttgatacatcctgtactttttatgctccttaaatgtgta----taaaagttgttaagcaggcttctgatgcattg |
282 |
Q |
| |
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|||||||||||||||| ||| |||| || |||||||||||||||||| |||||| ||||||| ||||||||||||| || ||||||||||||||| |
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| T |
26659282 |
cttctttggcttgaatctaatgttttgtatgcatcctgtactttttatgttccttatatgtgtataggtaaaagttgttaatcacgcttctgatgcattg |
26659381 |
T |
|
| Q |
283 |
cttgtg |
288 |
Q |
| |
|
|||||| |
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|
| T |
26659382 |
cttgtg |
26659387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 33631760 - 33631487
Alignment:
| Q |
4 |
ctgatattcttttcctttgatgcagaaatacatggaagattcttccttccaaggtagcactccctctttcttattgcttctctctcttacattgattaaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33631760 |
ctgatattcttttcctttgatgcagaaatacatggaagattcttccttccaaggtagcac-----gtttcttattgcttctctctcttacattgattaaa |
33631666 |
T |
|
| Q |
104 |
catgtcgcgccattttatatatttagttcttgtcnnnnnnnctcttcaagtctagagtggaacatgaatgaaaaattctgaatcttctttggcttgaata |
203 |
Q |
| |
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|||| ||| ||||||||| ||||||||||||||| | |||| | ||||||||||||||||| | |||||| | |||||||||||| |||||| |
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| T |
33631665 |
catgacgcaccattttatttatttagttcttgtctttttttcacttccattctagagtggaacatgagtaaaaaatcattaatcttctttggtctgaata |
33631566 |
T |
|
| Q |
204 |
taaaatttttgatacatcctgtactttttatgctccttaaatgtgta--taaaagttgttaagcaggcttctgatgcat |
280 |
Q |
| |
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|||| |||| || |||||||||||||||||| ||||| |||| || |||||||| |||| || |||||||||||| |
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| T |
33631565 |
taaagttttgtatgcatcctgtactttttatgttccttgtatgtataggtaaaagtttttaatcacacttctgatgcat |
33631487 |
T |
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