View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20975_high_14 (Length: 208)
Name: NF20975_high_14
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20975_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 7584239 - 7584056
Alignment:
| Q |
10 |
tgagatgaactataagaaacatcaagcttaaaaacagtagttcttctaaaaacatcattcaattcttctatnnnnnnnngttgtccttgactcttggata |
109 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7584239 |
tgagaagaactataagaaacatcaagattaaaaacagtagttcttctaaaaacaacattcaattcttctataaaaaaaaattgtccttgactcttggata |
7584140 |
T |
|
| Q |
110 |
gaaagtgaaagttgagcaacatatgcgtgagatgatctatataccttatgtcttaaattttcgtgatcatcctggggtcccctc |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7584139 |
gaaagtgaaagttgagcaacatatgcgtgagatgatctatataacttatgtcttaaattttcgtgatcatccctgggtcccctc |
7584056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University