View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20975_high_5 (Length: 446)
Name: NF20975_high_5
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20975_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 17666197 - 17666613
Alignment:
| Q |
20 |
actcagagcgtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcaatgctaagaggttgattggccgcagattcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
17666197 |
actcagagcgtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcgatgctaagaggttgattggccgtagattcaa |
17666296 |
T |
|
| Q |
120 |
cgatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17666297 |
cgatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagat |
17666396 |
T |
|
| Q |
220 |
aagcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17666397 |
aagcaattttccgcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
17666496 |
T |
|
| Q |
320 |
gtatccctgtttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgc |
419 |
Q |
| |
|
||||||||| ||| |||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||| || |||||||| ||||||||||| | |
|
|
| T |
17666497 |
gtatccctgcttattttaattttaatcacagacaagctactaaggatgccggtcttatttctggtcttaatgtcctgggaattatcaatgagcccactcc |
17666596 |
T |
|
| Q |
420 |
tgcagccattgcctatg |
436 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
17666597 |
tgcagccattgcttatg |
17666613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 17716201 - 17716617
Alignment:
| Q |
20 |
actcagagcgtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcaatgctaagaggttgattggccgcagattcaa |
119 |
Q |
| |
|
|||| |||| |||||| |||||||||||| |||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
17716201 |
actccgagcatctcatcggtgatgccgctctgaatcaagtctcctcgaaccctatcaacaccgtcttcgatgctaagaggttgattggccgtagattcag |
17716300 |
T |
|
| Q |
120 |
cgatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagat |
219 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||| ||| | |
|
|
| T |
17716301 |
tgatccctccgttcagagtgatatgaagttgtggccttttaagataatttctggcccggatgaaaagccaatgattggtgttaactacagtggtaaagtt |
17716400 |
T |
|
| Q |
220 |
aagcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
319 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17716401 |
aagcaatttgccgcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
17716500 |
T |
|
| Q |
320 |
gtatccctgtttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgc |
419 |
Q |
| |
|
| |||||| ||||||||||||| ||||| |||||||||||| |||| ||| |||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
17716501 |
ctgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaattattaatgagcccactgc |
17716600 |
T |
|
| Q |
420 |
tgcagccattgcctatg |
436 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
17716601 |
tgcagccattgcttatg |
17716617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 17647543 - 17647959
Alignment:
| Q |
20 |
actcagagcgtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcaatgctaagaggttgattggccgcagattcaa |
119 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
|
|
| T |
17647543 |
actctgagagtctcatcggtgatgccgctaagaatcaagtcgccaggaaccctatcaacaccatcttcgatgctaagaggttgattggtcgtagattcag |
17647642 |
T |
|
| Q |
120 |
cgatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagat |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
17647643 |
cgatgcctccgttcagagtgatatgaagttgtggccttttaagataatttctggcctggatgaaaagccaatgattgttgttaactacaatggtgaagat |
17647742 |
T |
|
| Q |
220 |
aagcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
319 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
17647743 |
aagcaatttgccgcagaagagatctctgccatggtactcatgaagattcgagaggttgctgaggcctaccttggctctgccattaaggatgctgttgtta |
17647842 |
T |
|
| Q |
320 |
gtatccctgtttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgc |
419 |
Q |
| |
|
| |||||| |||||||||| | ||||||||||||| ||| | |||| || || |||||||| ||||||||| | |||||||| | ||||||| ||| |
|
|
| T |
17647843 |
ctttccctgcttactttaataattatcagatacaagccactgtggttgcctgtgtttttgctggtattaatgtcaggggaattatcaaggagcccattgc |
17647942 |
T |
|
| Q |
420 |
tgcagccattgcctatg |
436 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
17647943 |
tgcagccattgcttatg |
17647959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 17717462 - 17717878
Alignment:
| Q |
20 |
actcagagcgtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcaatgctaagaggttgattggccgcagattcaa |
119 |
Q |
| |
|
|||| |||| |||||| ||||||||||||| |||||||||| || |||||||||||||||| ||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
17717462 |
actccgagcatctcatcggtgatgccgctatgaatcaagtcgcctcgaaccctatcaacaccgtcttcgatgctaagaggttgattggccgtagattcag |
17717561 |
T |
|
| Q |
120 |
cgatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagat |
219 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||| |||||||| |||||||||| | ||||||||| ||||||||||| |||||||| ||||||||| |
|
|
| T |
17717562 |
cgatccctccgttcagtgtgatatgaagttgtggccttttaagataatttctggcctgggtgaaaagccaatgattggtgtaaactacaatggtgaagat |
17717661 |
T |
|
| Q |
220 |
aagcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
319 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |||| ||| |||||| |||||||||||||| |
|
|
| T |
17717662 |
aagcaatttgctgcagaagagatctcttccatggtactctggaagatgcgtgagattgcagaggcctactttggttctaccattaggaatgccgttgtta |
17717761 |
T |
|
| Q |
320 |
gtatccctgtttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgc |
419 |
Q |
| |
|
| |||||| |||||||||| | ||||||||||| |||||| ||||||| |||| |||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
17717762 |
ctgtccctgcttactttaatgattctcagatacaagttactaaggatgccgctctttttgctggtcttaatgtcatggaaattatcgatgagcccactgc |
17717861 |
T |
|
| Q |
420 |
tgcagccattgcctatg |
436 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
17717862 |
tgcagccattgcttatg |
17717878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 17703557 - 17703973
Alignment:
| Q |
20 |
actcagagcgtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcaatgctaagaggttgattggccgcagattcaa |
119 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||||||||||| || ||||||| |
|
|
| T |
17703557 |
actccgagtgtctcatcggtgatgccgctaagaatcaagtctcctcgaaccctatcaacaccgtcttcgatgctaagaggttgattggtcgtagattcag |
17703656 |
T |
|
| Q |
120 |
cgatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagat |
219 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
17703657 |
cgatatctccgttcagagtgatatgaagttgtggccttttaagattatttctggcccggatgataagccaatgattggtgttaactacaatggtgaagat |
17703756 |
T |
|
| Q |
220 |
aagcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
319 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| ||||| |||||| ||| || |||||||||||||| |||||||| |||||| |||||| ||||||| |
|
|
| T |
17703757 |
aagcaatttactgcagaagagatctcttccatgttactctggaagattcgtcagattgctgaggcctactttggctctcccattaggaatgctgttgtta |
17703856 |
T |
|
| Q |
320 |
gtatccctgtttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgc |
419 |
Q |
| |
|
| ||||||||||||||||| | ||||| |||||||||||| ||||| | | ||||||||| |||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17703857 |
ctgtccctgtttactttaataattctcagagacaagctactaaggatgctgctgttattgctgaacttaatgtcatgggaattatcgatgagcccactgc |
17703956 |
T |
|
| Q |
420 |
tgcagccattgcctatg |
436 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
17703957 |
ttcagccattgcttatg |
17703973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 436
Target Start/End: Original strand, 17621468 - 17621875
Alignment:
| Q |
29 |
gtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacaccatcttcaatgctaagaggttgattggccgcagattcaacgatgcctc |
128 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || |||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
17621468 |
gtctcattggtgatactgctaagaatcaagttgcctcgaaccctatcaacaccgtctttgatgctaagaggttgattggccgtagattcagcgatgcctc |
17621567 |
T |
|
| Q |
129 |
tgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagataagcaattt |
228 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||| |
|
|
| T |
17621568 |
tgttcagagggatatgaagttgtggccttttaagatgatttctggcccggatgaaaagccattgattggtgttaacaactttggtgaagataagcaattt |
17621667 |
T |
|
| Q |
229 |
tcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgttagtatccctg |
328 |
Q |
| |
|
| ||||||||||||| |||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||| ||||||| | |||||| |
|
|
| T |
17621668 |
gccccagaagagatctcatccatgatactctggaagatgcgtgagattgctgaggcctacgttggctctgccattaggaatgctgttgttactgtccctg |
17621767 |
T |
|
| Q |
329 |
tttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgctgcagccat |
428 |
Q |
| |
|
||||||||||| | ||||| |||| |||||| ||||| | | || |||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
17621768 |
tttactttaatgattctcagagacaaattactaaggatgcagctgtttttgctggtcttaatgtcatggatattatcgatgagcccactgctgcagccat |
17621867 |
T |
|
| Q |
429 |
tgcctatg |
436 |
Q |
| |
|
||| |||| |
|
|
| T |
17621868 |
tgcttatg |
17621875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 307
Target Start/End: Original strand, 17719755 - 17719907
Alignment:
| Q |
161 |
agattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagataagcaattttcggcagaagagatctcttcca------tggt |
254 |
Q |
| |
|
|||| |||||||| ||| ||||||||| |||||||||||||||||||||||| | ||||||||||| | ||||||||||| | ||||| |||| |
|
|
| T |
17719755 |
agataatttctggaccggctgaaaagccaatgattggtgttaactacaagggtaatgataagcaattaaccgcagaagagatatattccatggtagtggt |
17719854 |
T |
|
| Q |
255 |
actcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaaga |
307 |
Q |
| |
|
||||| |||||||||| || ||| |||||| ||||||||||||||||| |||| |
|
|
| T |
17719855 |
actcatgaagatgcgtaagattgttgaggcttaccttggctctgccatgaaga |
17719907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 17720139 - 17720235
Alignment:
| Q |
217 |
gataagcaattttcggcagaagagatctcttccatggta------ctcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaaga |
307 |
Q |
| |
|
|||||||||||| | ||||||||||| | |||||||||| |||| |||||||||| || |||||||||| ||||||||||||||||| |||| |
|
|
| T |
17720139 |
gataagcaatttaccgcagaagagatatattccatggtagtggtactcatgaagatgcgtaagattgctgaggcttaccttggctctgccatgaaga |
17720235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 89 - 436
Target Start/End: Complemental strand, 39986237 - 39985890
Alignment:
| Q |
89 |
atgctaagaggttgattggccgcagattcaacgatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcc |
188 |
Q |
| |
|
|||| |||||||||||||| || ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
39986237 |
atgccaagaggttgattggtcgtagattcagtgatgcctctgttcagagtgacatgaagttgtggccttttaagattatttctgggccagctgaaaagcc |
39986138 |
T |
|
| Q |
189 |
tatgattggtgttaactacaagggtgaagataagcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctac |
288 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| ||||| | || |||||||||||||||||||| || | ||||||||||||| |||| || || ||| |
|
|
| T |
39986137 |
acttattggtgttaactacaaaggtgaagataaggaatttgctgccgaagagatctcttccatggtgctaatgaagatgcgtgagattgccgaagcgtac |
39986038 |
T |
|
| Q |
289 |
cttggctctgccattaagaatgccgttgttagtatccctgtttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtctta |
388 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| | |||||| |||||||||| ||| |||||||| || ||||| || ||||||| ||||||| |
|
|
| T |
39986037 |
cttggttctgccattaagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtctta |
39985938 |
T |
|
| Q |
389 |
atgtcatgagaattatctatgagcccactgctgcagccattgcctatg |
436 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
39985937 |
atgtcatgcgaattatcaatgagcccactgctgctgccattgcttatg |
39985890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 121 - 319
Target Start/End: Original strand, 8017022 - 8017220
Alignment:
| Q |
121 |
gatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagata |
220 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||| ||||| |||| || ||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
8017022 |
gatgcatctgttcagagtgacatgaagttgtggccttttaaggttattgctggtcctggtgaaaagccaatgattggtgttaactacaagggtgaggaca |
8017121 |
T |
|
| Q |
221 |
agcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgtta |
319 |
Q |
| |
|
|||||||| | || || || || || || |||||||||| |||||||||||| ||||||| || ||||| || || | | |||||||||||||||| |
|
|
| T |
8017122 |
agcaatttgctgctgaggaaatttcgtctatggtactcataaagatgcgtgagattgctgaagcttacctcggttcaactgtgaagaatgccgttgtta |
8017220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 121 - 434
Target Start/End: Complemental strand, 8103226 - 8102913
Alignment:
| Q |
121 |
gatgcctctgttcagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagata |
220 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| |||||| ||||| | || || ||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
8103226 |
gatgcttctgttcagagtgacatgaagttgtggccttttaaggttattgcgggtcctggtgaaaagccaatgattggtgttaactacaagggtgaggaaa |
8103127 |
T |
|
| Q |
221 |
agcaattttcggcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgttag |
320 |
Q |
| |
|
| | ||| || | || || ||||| |||||||| | | |||||||||||| |||| || || || ||||| |||||||||||||||| || | |
|
|
| T |
8103126 |
aactgtttgcgtctgaggaaatctcatccatggttttgattaagatgcgtgagattgccgaagcttatcttggtgtcaccattaagaatgccgtcgtcac |
8103027 |
T |
|
| Q |
321 |
tatccctgtttactttaattttaatcagatacaagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgct |
420 |
Q |
| |
|
| |||||| |||||| ||| | |||| ||||| ||||| ||||| ||| |||| |||||| | ||||| |||||||||| ||||||| |||||| |
|
|
| T |
8103026 |
tgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaattattaatgagccaactgct |
8102927 |
T |
|
| Q |
421 |
gcagccattgccta |
434 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
8102926 |
gctgctattgccta |
8102913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 39987004 - 39986943
Alignment:
| Q |
20 |
actcagagcgtctcattggtgatgccgctaagaatcaagtcaccaggaaccctatcaacacc |
81 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
39987004 |
actccgagcgtctcatcggtgatgctgctaagaatcaagttgccatgaaccctatcaacacc |
39986943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 284
Target Start/End: Complemental strand, 8667952 - 8667815
Alignment:
| Q |
147 |
gttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagataagcaattttcggcagaagagatctct |
246 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||| || ||||||||| |||||| ||||||||| |||| ||||| |||| || || || || ||| |
|
|
| T |
8667952 |
gttgtggccattcaaggttatttctggtgttaatgacaaacctatgattactgttaagtacaagggtcaagagaagcacttttgtgctgaggaaatatct |
8667853 |
T |
|
| Q |
247 |
tccatggtactcacgaagatgcgtgaggttgctgaggc |
284 |
Q |
| |
|
|| ||||| || || |||||||| |||||||| ||||| |
|
|
| T |
8667852 |
tctatggtgcttacaaagatgcgagaggttgcggaggc |
8667815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 8585570 - 8585630
Alignment:
| Q |
376 |
attgctggtcttaatgtcatgagaattatctatgagcccactgctgcagccattgcctatg |
436 |
Q |
| |
|
|||||||| |||||||| ||||| || ||| |||| |||||||||||||| ||||| |||| |
|
|
| T |
8585570 |
attgctggccttaatgttatgaggataatcaatgaacccactgctgcagctattgcatatg |
8585630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 8628836 - 8628776
Alignment:
| Q |
376 |
attgctggtcttaatgtcatgagaattatctatgagcccactgctgcagccattgcctatg |
436 |
Q |
| |
|
|||||||| |||||||| ||||| || ||| |||| |||||||||||||| ||||| |||| |
|
|
| T |
8628836 |
attgctggccttaatgttatgaggataatcaatgaccccactgctgcagctattgcatatg |
8628776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 30775556 - 30775496
Alignment:
| Q |
376 |
attgctggtcttaatgtcatgagaattatctatgagcccactgctgcagccattgcctatg |
436 |
Q |
| |
|
||||||||||||||||| |||||||| || ||||||||||||| ||||| ||||| |||| |
|
|
| T |
30775556 |
attgctggtcttaatgttatgagaataattaatgagcccactgcagcagctattgcatatg |
30775496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 317
Target Start/End: Original strand, 23596206 - 23596390
Alignment:
| Q |
133 |
cagagtgatatgaagttgtggccatttaagattatttctggcccgtatgaaaagcctatgattggtgttaactacaagggtgaagataagcaattttcgg |
232 |
Q |
| |
|
|||||||| ||||| |||||||| || ||| | ||| ||||||| ||| || || ||||| | || |||||||||| || || ||||||||||| | |
|
|
| T |
23596206 |
cagagtgacatgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctg |
23596305 |
T |
|
| Q |
233 |
cagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgccattaagaatgccgttgt |
317 |
Q |
| |
|
| |||||||| ||||||||||| || | ||||||| ||| | || ||||| |||||||| | | ||||||||||||||||| |
|
|
| T |
23596306 |
ctgaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgt |
23596390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 23596425 - 23596509
Alignment:
| Q |
352 |
caagctactaatgatgccggtcttattgctggtcttaatgtcatgagaattatctatgagcccactgctgcagccattgcctatg |
436 |
Q |
| |
|
||||||||||| ||||| ||| | ||| |||| || ||||| ||||||||||| | |||||||||||||| || ||||| |||| |
|
|
| T |
23596425 |
caagctactaaggatgctggtgtcatttctggactcaatgtgatgagaattattaacgagcccactgctgccgctattgcttatg |
23596509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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