View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20975_high_9 (Length: 314)

Name: NF20975_high_9
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20975_high_9
NF20975_high_9
[»] chr3 (3 HSPs)
chr3 (5-305)||(1628650-1628958)
chr3 (110-172)||(10821806-10821868)
chr3 (8-101)||(10821685-10821778)
[»] chr2 (1 HSPs)
chr2 (225-294)||(37545197-37545266)
[»] chr4 (1 HSPs)
chr4 (139-290)||(29413160-29413317)
[»] chr8 (1 HSPs)
chr8 (224-271)||(7674195-7674242)
[»] chr5 (1 HSPs)
chr5 (201-270)||(8320002-8320071)
[»] chr1 (1 HSPs)
chr1 (224-271)||(36296210-36296257)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 1628958 - 1628650
Alignment:
Q  5 tggcagttgctcatctccttgatctctcgacagcatgcgcgaggcgcagaaggaaacgcttgaggtgcacaccaaaccaatgagtagttgctaacgccac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  1628958 tggcagttgctcatctccttgatctctcgacagcatgcgcgaggcgcagaaggaaacacttgaggtggacaccaaaccaatgagtagttgctaacgccac 1628859  T
Q  105 agtagtatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaacaccgcagcttatgtatttctcttccgtcctttg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  1628858 agtagtatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaacaccgcaacttatgtatttcgcttccgtcctttg 1628759  T
Q  205 aattatgttgtttatgacagtt--------atcatgtgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccacat 296  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1628758 aattatgttgtttatgacagttatcaagttatcatgtgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccacat 1628659  T
Q  297 gacctatga 305  Q
    |||||||||    
T  1628658 gacctatga 1628650  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 10821806 - 10821868
Alignment:
Q  110 tatgtccatgcgcgagactcgtgcgtgtttttgaaggtttggaaacaagtttgaggatcaaca 172  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10821806 tatgtccatgcgcgagactcgtgcatgtttttgaaggtttggaaacaagtttgaggatcaaca 10821868  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 10821685 - 10821778
Alignment:
Q  8 cagttgctcatctccttgatctctcgacagcatgcgcgaggcgcagaaggaaacgcttgaggtgcacaccaaaccaatgagtagttgctaacgc 101  Q
    |||||||||||||||||||| ||||  ||||| |||| |||||||||||||||| | ||||||||| | |||||||| ||  ||||||||||||    
T  10821685 cagttgctcatctccttgatatctcatcagcacgcgctaggcgcagaaggaaacacatgaggtgcatagcaaaccaaggatgagttgctaacgc 10821778  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 37545197 - 37545266
Alignment:
Q  225 ttatcatgtgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaaccac 294  Q
    |||||||||||| ||||||||| ||| |||| ||||||||||||||| ||| ||||||||||| ||||||    
T  37545197 ttatcatgtgtatctaaactttaatagattatgattgaatgatgaacctttatgtaatggttgaaaccac 37545266  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 29413160 - 29413317
Alignment:
Q  139 tttgaaggtttggaaacaagtttgaggatcaacaccgcagcttatgtatttctcttccgtcctttgaattatgttgtttatgacagttat------catg 232  Q
    |||||||| ||| |||||||||| | |||| ||||    | |||||||||||||||||   |||| ||||||||||||||| ||| | ||      || |    
T  29413160 tttgaaggcttgaaaacaagtttaaagatctacacatgtgtttatgtatttctcttccactctttaaattatgttgtttattacactgattggaatcaag 29413259  T
Q  233 tgtaactaaactttcataaattaggattgaatgatgaacatttttgtaatggttggaa 290  Q
    ||||||||||||||||||  ||| ||||||||||| |||| || ||||||||||||||    
T  29413260 tgtaactaaactttcatattttatgattgaatgataaacaattatgtaatggttggaa 29413317  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 7674242 - 7674195
Alignment:
Q  224 gttatcatgtgtaactaaactttcataaattaggattgaatgatgaac 271  Q
    ||||||||||||||||||||| || || ||||||||||||||||||||    
T  7674242 gttatcatgtgtaactaaactctcgtagattaggattgaatgatgaac 7674195  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 8320002 - 8320071
Alignment:
Q  201 tttgaattatgttgtttatgacagttatcatgtgtaactaaactttcataaattaggattgaatgatgaa 270  Q
    |||||| | |||||||||| ||   ||||| ||||||||||||| |||||||||| ||||||||||||||    
T  8320002 tttgaactttgttgtttattactagtatcacgtgtaactaaactctcataaattatgattgaatgatgaa 8320071  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 36296257 - 36296210
Alignment:
Q  224 gttatcatgtgtaactaaactttcataaattaggattgaatgatgaac 271  Q
    ||||| ||||||||||||||| ||||| ||||||||||||| ||||||    
T  36296257 gttattatgtgtaactaaactctcatagattaggattgaatcatgaac 36296210  T

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