View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20975_low_11 (Length: 307)
Name: NF20975_low_11
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20975_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 32253053 - 32253335
Alignment:
| Q |
18 |
attagttcattaaatttcattaatttgacttatcacatcatagaaatgtacacattggttaaata-ttagttttatgcataccctgtagaggagaacata |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32253053 |
attagttcattaaatttcattaatttaacttatcacatcatagaaatgtacacattggttaaataattagttttatgcataccctgtagaggagaacata |
32253152 |
T |
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| Q |
117 |
ttcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggttgtagagatctgcatgtgcaggg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253153 |
ttcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggttgtagagatctgcatgtgcaggg |
32253252 |
T |
|
| Q |
217 |
cgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgttctttgtttctctctgct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253253 |
cgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgttctttgtttctctctgct |
32253335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 94 - 299
Target Start/End: Original strand, 32242558 - 32242763
Alignment:
| Q |
94 |
cataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggt |
193 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32242558 |
cataccctatagaggagaacatattcagcactgaggcgtaaattgcggaggattgggagagttaaactgttaacatcactgatgcgacctgcacgtgggt |
32242657 |
T |
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| Q |
194 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgttctttgtttctc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32242658 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccattctgtccacgtgtcctttgtttctc |
32242757 |
T |
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| Q |
294 |
tctgct |
299 |
Q |
| |
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|||||| |
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| T |
32242758 |
tctgct |
32242763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 94 - 269
Target Start/End: Original strand, 32248386 - 32248561
Alignment:
| Q |
94 |
cataccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggt |
193 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
32248386 |
cataccctgtagaggagaacatattcagcactgaggcgtaaattgcgaaggattgggagggttaaactgttagcatcgctgatgcgacctgcacgtgggt |
32248485 |
T |
|
| Q |
194 |
tgtagagatctgcatgtgcagggcgagcgatgttctccacaagtcttgcactgcagatagtttcttccaaaccatt |
269 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
32248486 |
tgtagagatctgcacgtgcagggcgagcgatgttctccacaatccttaaactgcagatagtttcttccaaaccatt |
32248561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 30605136 - 30604961
Alignment:
| Q |
96 |
taccctgtagaggagaacatattcggcactgaggcgtaaattgcggaggattgggagggttaaactgttaacatcactgatgcgacctgcacgtgggttg |
195 |
Q |
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|||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| || || |||||||||||| |
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| T |
30605136 |
taccctgtagaggactacgtattcggcaccaagacgtaaattgcggaggattgggagggttaaactgttgacggtgctgattcgtccggcacgtgggttg |
30605037 |
T |
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| Q |
196 |
tagagatctgcatgtgcagggcgagcgatgttctccacaagtctt-gcactgcagatagtttcttccaaaccattct |
271 |
Q |
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||||| |||||| |||||||| |||| ||||||| | | | |||| ||||||||||||||||||||||||||||||| |
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| T |
30605036 |
tagaggtctgcacgtgcagggtgagctatgttct-cgcgaatcttcgcactgcagatagtttcttccaaaccattct |
30604961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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