View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20975_low_2 (Length: 625)

Name: NF20975_low_2
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20975_low_2
NF20975_low_2
[»] chr3 (9 HSPs)
chr3 (19-616)||(24263204-24263818)
chr3 (392-444)||(15806482-15806533)
chr3 (394-450)||(28135826-28135882)
chr3 (145-184)||(24838584-24838623)
chr3 (397-455)||(17796593-17796651)
chr3 (397-455)||(19105033-19105091)
chr3 (399-444)||(3041200-3041244)
chr3 (399-444)||(18013924-18013968)
chr3 (497-537)||(41671470-41671510)
[»] chr1 (2 HSPs)
chr1 (392-450)||(18337491-18337549)
chr1 (497-537)||(12513562-12513602)
[»] chr8 (6 HSPs)
chr8 (129-185)||(11546199-11546255)
chr8 (129-202)||(11562237-11562309)
chr8 (497-537)||(17566389-17566429)
chr8 (394-449)||(1018233-1018287)
chr8 (262-349)||(22687830-22687917)
chr8 (129-175)||(11550955-11551001)
[»] chr7 (3 HSPs)
chr7 (399-449)||(23618589-23618638)
chr7 (392-450)||(26565597-26565655)
chr7 (410-443)||(8254285-8254318)
[»] scaffold0534 (1 HSPs)
scaffold0534 (497-537)||(961-1001)
[»] chr4 (4 HSPs)
chr4 (497-537)||(6346753-6346793)
chr4 (392-444)||(24719619-24719670)
chr4 (396-459)||(6347026-6347087)
chr4 (504-537)||(24719866-24719899)
[»] chr5 (4 HSPs)
chr5 (392-459)||(43005904-43005970)
chr5 (503-537)||(26021608-26021642)
chr5 (497-537)||(19979859-19979899)
chr5 (411-459)||(26021395-26021442)
[»] chr2 (3 HSPs)
chr2 (398-444)||(31023331-31023376)
chr2 (504-537)||(16767084-16767117)
chr2 (504-537)||(16767221-16767254)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Complemental strand, 24263818 - 24263204
Alignment:
Q  19 accaactatgtgaaaagaaaagtatgtttcctaaatcattgagtaaaatactcctgtct-cctaattcacaatgtaagataatatcatagaaataccaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24263818 accaactatgtgaaaagaaaagtatgtttcctaaatcattgagtaaaatactcctgtcttcctaattcacaatgtaagataatatcatagaaataccaaa 24263719  T
Q  118 taaataaggcctatagattcatagaattagaagccaactcaatcattttgtctaaccagcatctataatacctacttgcatattcagccaaacaaacgca 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263718 taaataaggcctatagattcatagtattagaagccaactcaatcattttgtctaaccagcatctataatacctacttgcatattcagccaaacaaacgca 24263619  T
Q  218 ataaatgatgagagtttcattgtatatcagaaatgaaaattcacaaggaaagatccagtgttttaaatagttagctacatttcttcaagttggtaccaat 317  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24263618 ataaataatgagagtttccttgtatatcagaaatgaaaattcacaaggaaagatccagtgttctaaatagttagctacatttcttcaagttggtaccaat 24263519  T
Q  318 tgataactgtgtttctatatagtaataa----------------agtaccagcattgatatcctcctaaaagttcttgtttgattgggtctcctagtaaa 401  Q
    ||||||||||||||||| ||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263518 tgataactgtgtttctacatagtaataaagtaaaagcagaacaaagtaccagcattgatatcctcctaaaagttcttgtttgattgggtctcctagtaaa 24263419  T
Q  402 atcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaagaatgaataaatacaatttaatatatcacagaggttcatttac 501  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24263418 atcgcacaaaaatcgtgaaatccatacaaaattgtaggatttttaagggattttgaagaatgaataaatacaatttaatatgtcacagaggttcatttac 24263319  T
Q  502 aattttcgattttgctcttcccttttgacctgaagcnnnnnnntaacaatgcnnnnnnnnncttcagtattcctgtcacacnnnnnnncattatgcaaca 601  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||          || ||||||||||||||||       ||||||||||||    
T  24263318 aattttcgattttgctcttcccttttgacctgaagcaaaaaaataacaatgctttttttttttttagtattcctgtcacacaaaaaaacattatgcaaca 24263219  T
Q  602 tttattaagaataat 616  Q
    |||||||||||||||    
T  24263218 tttattaagaataat 24263204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 15806533 - 15806482
Alignment:
Q  392 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 444  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  15806533 tcctagtaaaatcgcacaaaa-tcgtgaaatccatacaaaatcgcaggatttt 15806482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 450
Target Start/End: Original strand, 28135826 - 28135882
Alignment:
Q  394 ctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 450  Q
    ||||||||||| ||  |||||||| ||||||||||||||||| |||||||| |||||    
T  28135826 ctagtaaaatcacatcaaaatcgtaaaatccatacaaaatcgaaggattttaaaggg 28135882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 24838584 - 24838623
Alignment:
Q  145 tagaagccaactcaatcattttgtctaaccagcatctata 184  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  24838584 tagaagccaactcaatcattttgtttaaccagcatatata 24838623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 17796593 - 17796651
Alignment:
Q  397 gtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggatttt 455  Q
    ||||||||| |  |||||||||||||||||||||||| | |||||||| ||||| ||||    
T  17796593 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggttttt 17796651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 19105033 - 19105091
Alignment:
Q  397 gtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggatttt 455  Q
    ||||||||| |  |||||||||||||||||||||||| | |||||||| ||||| ||||    
T  19105033 gtaaaatcgtatcaaaatcgtgaaatccatacaaaattgcaggattttaaagggttttt 19105091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 3041200 - 3041244
Alignment:
Q  399 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 444  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||    
T  3041200 aaaatcgcacaaaa-tcgtgaaatccattcaaaatcgcaggatttt 3041244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 18013924 - 18013968
Alignment:
Q  399 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 444  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||    
T  18013924 aaaatcgcacaaaa-tcgtgaaatccatttaaaatcgtaggatttt 18013968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 537
Target Start/End: Original strand, 41671470 - 41671510
Alignment:
Q  497 tttacaattttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  41671470 tttacaattatcgattttgctcttctctttcgacctgaagc 41671510  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 18337549 - 18337491
Alignment:
Q  392 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 450  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||    
T  18337549 tcctagtaaaatcgcatcaaaatcgtgaaatccatacaaaatcgtaggattttaaaggg 18337491  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 537
Target Start/End: Original strand, 12513562 - 12513602
Alignment:
Q  497 tttacaattttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  12513562 tttacaattgtcgattttgctcttctcttttgacctgaagc 12513602  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 11546255 - 11546199
Alignment:
Q  129 tatagattcatagaattagaagccaactcaatcattttgtctaaccagcatctataa 185  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||    
T  11546255 tatagattcataaaattaaaagccaactcaatcattttgtctaaccaccatcaataa 11546199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 11562237 - 11562309
Alignment:
Q  129 tatagattcatagaattagaagccaactcaatcattttgtctaaccagcatctataatacctacttgcatattc 202  Q
    |||||||||||| ||| | |||| ||||||||||||||||||||||| |||  |||| | ||||||||||||||    
T  11562237 tatagattcataaaataaaaagcaaactcaatcattttgtctaaccaccattgataa-aactacttgcatattc 11562309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 537
Target Start/End: Original strand, 17566389 - 17566429
Alignment:
Q  497 tttacaattttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  17566389 tttacgattttcaattttgctcttcccttttgacctgaagc 17566429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 449
Target Start/End: Complemental strand, 1018287 - 1018233
Alignment:
Q  394 ctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagg 449  Q
    |||||||| |||||||| | |||| |||||||||||||||||||||||||| ||||    
T  1018287 ctagtaaagtcgcacaata-tcgtaaaatccatacaaaatcgtaggattttaaagg 1018233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 349
Target Start/End: Original strand, 22687830 - 22687917
Alignment:
Q  262 aaggaaagatccagtgttttaaatagttagctacatttcttcaagttggtaccaattgataactgtgtttctatatagtaataaagta 349  Q
    ||||||||||||| |||| ||||||| |  ||||||| || ||||   |||||||||||||||| ||||||||| || |||| |||||    
T  22687830 aaggaaagatccactgttctaaatagctgactacattcctacaagaaagtaccaattgataactatgtttctatgtaataatcaagta 22687917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 11551001 - 11550955
Alignment:
Q  129 tatagattcatagaattagaagccaactcaatcattttgtctaacca 175  Q
    |||| ||||||| ||||| |||||||||||||||||||||| |||||    
T  11551001 tatatattcataaaattaaaagccaactcaatcattttgtcgaacca 11550955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 449
Target Start/End: Complemental strand, 23618638 - 23618589
Alignment:
Q  399 aaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagg 449  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| ||||    
T  23618638 aaaatcgcacaaaa-tcgtgaaatccattcaaaatcgtaggattttgaagg 23618589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 26565655 - 26565597
Alignment:
Q  392 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaaggg 450  Q
    ||||| ||||||||||  |||||| |||||| ||||||||||| ||||||||| |||||    
T  26565655 tcctactaaaatcgcatcaaaatcatgaaattcatacaaaatcctaggattttaaaggg 26565597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 443
Target Start/End: Complemental strand, 8254318 - 8254285
Alignment:
Q  410 aaaatcgtgaaatccatacaaaatcgtaggattt 443  Q
    ||||||||||||||||| ||||||||||||||||    
T  8254318 aaaatcgtgaaatccattcaaaatcgtaggattt 8254285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 537
Target Start/End: Original strand, 961 - 1001
Alignment:
Q  497 tttacaattttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||| |||||| ||||||||||||||||||||||||||||    
T  961 tttacgattttcaattttgctcttcccttttgacctgaagc 1001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 537
Target Start/End: Complemental strand, 6346793 - 6346753
Alignment:
Q  497 tttacaattttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||| |||||||||||||||||||||||| ||||||||||    
T  6346793 tttacgattttcgattttgctcttccctttcgacctgaagc 6346753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 24719619 - 24719670
Alignment:
Q  392 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 444  Q
    ||||||||||||||||| |||| |||||||| |||||||||||| ||||||||    
T  24719619 tcctagtaaaatcgcacgaaaa-cgtgaaatacatacaaaatcgcaggatttt 24719670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 459
Target Start/End: Complemental strand, 6347087 - 6347026
Alignment:
Q  396 agtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 459  Q
    ||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||| ||||||||    
T  6347087 agtaaaatcgcacaaaa-tcgtgaaattcacacaaaatcgcaggattttaaaggg-ttttgaag 6347026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Original strand, 24719866 - 24719899
Alignment:
Q  504 ttttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||||||||||||||||||||| ||||||||||    
T  24719866 ttttcgattttgctcttccctttcgacctgaagc 24719899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 459
Target Start/End: Complemental strand, 43005970 - 43005904
Alignment:
Q  392 tcctagtaaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 459  Q
    ||||| |||||||||   |||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  43005970 tcctaataaaatcgcgtcaaaatcatgaaattcatacaaaatcgcaggatttttaaggg-ttttgaag 43005904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 503 - 537
Target Start/End: Original strand, 26021608 - 26021642
Alignment:
Q  503 attttcgattttgctcttcccttttgacctgaagc 537  Q
    |||||||||||||||||||||||||| ||||||||    
T  26021608 attttcgattttgctcttcccttttggcctgaagc 26021642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 537
Target Start/End: Original strand, 19979859 - 19979899
Alignment:
Q  497 tttacaattttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||| ||| ||||||||||||||| |||||||||||||||    
T  19979859 tttacgattgtcgattttgctcttctcttttgacctgaagc 19979899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 459
Target Start/End: Original strand, 26021395 - 26021442
Alignment:
Q  411 aaatcgtgaaatccatacaaaatcgtaggatttttaagggattttgaag 459  Q
    ||||||||| ||||||||||||||| |||||||| ||||| ||||||||    
T  26021395 aaatcgtgacatccatacaaaatcgcaggattttaaaggg-ttttgaag 26021442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 31023331 - 31023376
Alignment:
Q  398 taaaatcgcacaaaaatcgtgaaatccatacaaaatcgtaggatttt 444  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  31023331 taaaatcgcacaaaa-tcttgaaatctatacaaaatcgtaggatttt 31023376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Original strand, 16767084 - 16767117
Alignment:
Q  504 ttttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||||||||||||||||| ||||||||||||||    
T  16767084 ttttcgattttgctcttcctttttgacctgaagc 16767117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Original strand, 16767221 - 16767254
Alignment:
Q  504 ttttcgattttgctcttcccttttgacctgaagc 537  Q
    ||||||||||||||||||| ||||||||||||||    
T  16767221 ttttcgattttgctcttcctttttgacctgaagc 16767254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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