View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20975_low_3 (Length: 508)
Name: NF20975_low_3
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20975_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 1629417 - 1628933
Alignment:
| Q |
19 |
ggttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggac |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1629417 |
ggttcatcaacagcaaatagggtgaaatggcctggttatcatgtgatatcaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggac |
1629318 |
T |
|
| Q |
119 |
caacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1629317 |
caacatggttggctacaactactgtgccatttacatctggtctttgatcatttgtattttggtatagctatatctcttcattaattcaattattctacat |
1629218 |
T |
|
| Q |
219 |
agttatctgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagagat---attattcatattctttaat |
315 |
Q |
| |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1629217 |
agttatttgtaattaaattcattgtaattcttaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatataattattcatattctttaat |
1629118 |
T |
|
| Q |
316 |
tttgtactacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcctgtccttt |
415 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
1629117 |
tttgtactactttacaagttcaactttgatgatccagcggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcttgtcattt |
1629018 |
T |
|
| Q |
416 |
aaaaaatatatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctttggcagttgctcatctccttcatctc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
1629017 |
taaaaatatatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctgtggcagttgctcatctccttgatctc |
1628933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 1606119 - 1605891
Alignment:
| Q |
19 |
ggttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggac |
118 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||| |||||||||||||||||| |
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| T |
1606119 |
ggttcatcaacagcaaatagagtaaaatggcctggttatcatgtgatatcaaaccctaatgaagcatcaaagtttacggttgctggactccttgctggac |
1606020 |
T |
|
| Q |
119 |
caacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacat |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||| ||| |||||||| ||| ||||| ||| | |
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| T |
1606019 |
caacatggttggctacaactactgtgccatttacatctggtctttgatcatttatgttgtgctatagc--tatttcttcattgcctcagttattgtactt |
1605922 |
T |
|
| Q |
219 |
agttatctgtaattaaattcattgtaattct |
249 |
Q |
| |
|
| || | ||||||||| |||||||||||||| |
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| T |
1605921 |
aattctttgtaattaagttcattgtaattct |
1605891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 10821281 - 10821435
Alignment:
| Q |
19 |
ggttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggac |
118 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
10821281 |
ggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtc |
10821380 |
T |
|
| Q |
119 |
caacatggttggctacaactactgtgccatttacatctggtctttgatcatttgt |
173 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10821381 |
caacatggttggctaaaactactgtgccatttacatctggtctttgatcatttgt |
10821435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 1623241 - 1623071
Alignment:
| Q |
19 |
ggttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggac |
118 |
Q |
| |
|
|||||||||||| |||| || || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1623241 |
ggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggac |
1623142 |
T |
|
| Q |
119 |
caacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctat |
189 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | || || ||||||||| |
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| T |
1623141 |
caacatggttggctacaactaccgtgccatttacatctggtctttgatcatttatgttgtgctatagctat |
1623071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 226 - 494
Target Start/End: Original strand, 10821438 - 10821701
Alignment:
| Q |
226 |
tgtaattaaattcattgtaattctaaaaagaaaatgtgtcaatattctttaatttgtatattgagagaga---tattattcatattctttaattttgtac |
322 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
10821438 |
tgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagagagatattattattcatattc-----ctttgtac |
10821532 |
T |
|
| Q |
323 |
tacttaacaagttcaactttgatgatccgacggatctatgtttaaaaagtcaatatgtcagaaactaagtaacaaataagcatcctgtcctttaaaaaat |
422 |
Q |
| |
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|||| ||||||||| |||||||||| | || ||| |||||||||||||||||||| ||| |||||| |||||||||||| ||| ||| ||| ||||| |
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| T |
10821533 |
aactttacaagttcacctttgatgattcaactgatatatgtttaaaaagtcaatatatcataaactatgtaacaaataagaatcttgtaattttaaaaa- |
10821631 |
T |
|
| Q |
423 |
atatataaaattaagtcctatgcgcgaggtgcatgaggccatgcatcgcctttggcagttgctcatctcctt |
494 |
Q |
| |
|
| | ||| || ||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||| |
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|
| T |
10821632 |
aaaaatagaa--aagtcctatgcgcgaggcgcatgaggccatgcgtcgcgcgtgacagttgctcatctcctt |
10821701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 18780935 - 18780707
Alignment:
| Q |
19 |
ggttcatcaacagcaaacagggtgaaatggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttactggactccttgctggac |
118 |
Q |
| |
|
||||||||||||||||| || || ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| || |||||| |
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|
| T |
18780935 |
ggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaaccctaaggaagcatcaaagtttacggttgctggactcattactggac |
18780836 |
T |
|
| Q |
119 |
caacatggttggctacaactactgtgccatttacatctggtctttgatcatttgttttatggtatagctatatctcttcattaagtcaattattctacat |
218 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||| | || || |||||| ||| |||||||| ||||||||| ||| | |
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| T |
18780835 |
caacatggctggctacaactactgtgccatttacatctggtctttgatcttttatgttgtgctatagc--tatttcttcattgcttcaattattgtactt |
18780738 |
T |
|
| Q |
219 |
agttatctgtaattaaattcattgtaattct |
249 |
Q |
| |
|
| || | |||||||||||||||||||||||| |
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|
| T |
18780737 |
aattctttgtaattaaattcattgtaattct |
18780707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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