View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20975_low_6 (Length: 393)
Name: NF20975_low_6
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20975_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 31520861 - 31521257
Alignment:
| Q |
1 |
atcaaacaaatcttgattaagtgtttaacaagagatacatcatatatttcaaattcctaaaacaagagatgtaaacgaagaaaataaaatttgaaaagaa |
100 |
Q |
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| T |
31520861 |
atcaaacaaatcttgattaagtgtttaacaagagatacatcatacatttcaaattcctaaaacaagagatgtaaacgaagaaaataaaatttcaaaagaa |
31520960 |
T |
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| Q |
101 |
aatacattgtttcttctttgcagaaaaagttatagcatttgaacacttatttagcatgtggttagtttcaattcaatggggataagc----atccacaaa |
196 |
Q |
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| T |
31520961 |
aatacattgtttcttctttgcagaaaaagttatagcatttgaacacttatttagcatgtggttagtttcaattcaatggggataagcaagcatccacaaa |
31521060 |
T |
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| Q |
197 |
catattcacaaattaaacaaagctatcatgtgcaattagtggccttaattccaagatactttaccagttaccattggttttgaaattgttaaatcaatgt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31521061 |
catattcacaaattaaacaaagctatcatgtgcaattagtggccttaattccaagatactttaccagttaccattggttttgaaattgttaaatcaatgt |
31521160 |
T |
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| Q |
297 |
gtaaccgttcattttagcattttggacaatttttaccatcttgtggcaagctagctaaaagttatcgaatgttacatcatcttcttttcttcttcta |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31521161 |
gtaaccgttcattttagcattttggacaatttttaccatcttgtggcaagctagctaaaagttatcgaatgttacatcatcttcttttcttcttcta |
31521257 |
T |
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