View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20975_low_7 (Length: 392)
Name: NF20975_low_7
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20975_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 35924783 - 35924421
Alignment:
| Q |
18 |
ccttgaacttcatttcatgtttgacggtgtttctaactttccggcttgttcattctgtgagaattttactattgtattctatcccaaagatgggagagtc |
117 |
Q |
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| T |
35924783 |
ccttgaacttcatttcatgtttgacagtgtttctaactttccggcttgttcattctgtgagaattttactattgtattctatcccaaagatgggagagtc |
35924684 |
T |
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| Q |
118 |
tttattgtctatcaggattcatattacagtgcacaatggagtaacaaaaatatggtcgatccaacctagtaataactggtcaacagtacacagcttaaca |
217 |
Q |
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| T |
35924683 |
tttattgtctatcaggattcatattacagtgcacaatggagtaacaaaaatatggtcgatccaacctagtaataactggtcaacagtacacagcttaaca |
35924584 |
T |
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| Q |
218 |
tatttgagcatgttggttgaatacgnnnnnnnaataacatttgatacttctgctttggaaacttcatttaaacattataatgcgaca-nnnnnnncttgt |
316 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
35924583 |
tatttgagcatgttggttgaatacgtttttttaataacatttgatacttctgctttggaaacttcatttaaacattataatgcgacattttttttctagt |
35924484 |
T |
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| Q |
317 |
tagatgcatcatggattccttaaaactgcaatacatccacatgccacggttactaaatcagaa |
379 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35924483 |
tagatatatcatggattccttaaaactgcaatacatccacatgccacggttactaaatcagaa |
35924421 |
T |
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