View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20975_low_8 (Length: 376)
Name: NF20975_low_8
Description: NF20975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20975_low_8 |
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| [»] chr4 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0373 (1 HSPs) |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 376
Target Start/End: Original strand, 21513127 - 21513486
Alignment:
| Q |
16 |
cactttgtagtgttagaagataattagcttgtggtttgctctaaaatggatagcaagtagcctttttatacgcttgacatgttggttatatgttctctag |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21513127 |
cactttgtagtgttagaagataattagcttgtggtttgctctaaaatggatagtaagtagcctttttataggcttgacatgttggttatatgttctctag |
21513226 |
T |
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| Q |
116 |
agacttctt---ggggaaagtttctacaattatgtattttacattattctcaacnnnnnnnnnnnnnntctactagaaatttgtagcatttttcaacact |
212 |
Q |
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||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21513227 |
agacttcttcttggggaaagtttctacacttatgtattttacattattctcaacaaaaaaaaaa----tctactagaaatttgtagcatttttcaacact |
21513322 |
T |
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| Q |
213 |
cctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaatcttgctctacccgaatcctcgattgatgaaatgccgatcaattcttg |
312 |
Q |
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| T |
21513323 |
cctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaatcttgctctacccgaatcctcgattgatgaaatgccaatcaattcttg |
21513422 |
T |
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| Q |
313 |
tgtaccatgctcgaagatttttcttatgcccattcaaagattttcatagtgttagttcttttcc |
376 |
Q |
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| T |
21513423 |
tgtaccatgctcgaagatttttcttatgcccattcagagattttcatagtgttagttcttttcc |
21513486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 12842129 - 12842268
Alignment:
| Q |
17 |
actttgtagtgttagaagataattagcttgtggtttgctctaaaatggatagcaagtagcctttttatacgcttgacatgttggttatatgttctctaga |
116 |
Q |
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||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| || |
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| T |
12842129 |
actttgttgtgttagaagattgctagcttgtgccttactctaaaatggatagcaagtagcctatttatggacttgacatgttggttacatgttctctgga |
12842228 |
T |
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| Q |
117 |
gacttcttggggaaagtttctacaattatgtattttacat |
156 |
Q |
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|| |||| || ||| || |||| | ||||||||||||| |
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| T |
12842229 |
gagttctaggaagaaggttatacactgatgtattttacat |
12842268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 6825092 - 6825034
Alignment:
| Q |
207 |
aacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaat |
265 |
Q |
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| T |
6825092 |
aacactcctccttgatgcatatttcagtaactccaagcatagttcgtagtagctcaaat |
6825034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 207 - 376
Target Start/End: Original strand, 26947504 - 26947673
Alignment:
| Q |
207 |
aacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaatcttgctctacccgaatcctcgattgatgaaatgccgatcaa |
306 |
Q |
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| T |
26947504 |
aacactcctccttgatgcatatttcggtaactccaagcataattcgtagtagctcaaatcttgatctagccaaatcctcgattgataaaatgttgatcaa |
26947603 |
T |
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| Q |
307 |
ttcttgtgtaccatgctcgaagatttttcttatgcccattcaaagattttcatagtgttagttcttttcc |
376 |
Q |
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|||||||||||||||||||| ||| ||| |||||||||||||||||||||| |||| || | |||||||| |
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| T |
26947604 |
ttcttgtgtaccatgctcgaggatgtttattatgcccattcaaagattttcttagtcttggatcttttcc |
26947673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 8989947 - 8989830
Alignment:
| Q |
28 |
ttagaagataattagcttgtggtttgctctaaaatggatagcaagtagcctttttatacgcttgacatgttggttatatgttctctagagacttcttggg |
127 |
Q |
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|||||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||| | |||| ||| |
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| T |
8989947 |
ttagaagatatttagcttgtggcatggcctaaaatggatggcaagtagcctatttatacgctagacatgttggttatttgttctctagatagttctaggg |
8989848 |
T |
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| Q |
128 |
gaaagtttctacaattat |
145 |
Q |
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||||||||||| |||| |
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| T |
8989847 |
agaagtttctacacttat |
8989830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 8989498 - 8989466
Alignment:
| Q |
185 |
ctagaaatttgtagcatttttcaacactcctcc |
217 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
8989498 |
ctagaaatttgtagcatatttcaacactcctcc |
8989466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 15181 - 15239
Alignment:
| Q |
207 |
aacactcctccttgatacaaattttgataactccaagcatagttcgtggtagctcaaat |
265 |
Q |
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|||||||||||||||| || |||| |||||||||||||||||||| ||||||||||| |
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| T |
15181 |
aacactcctccttgatgcatatttcagtaactccaagcatagttcgtagtagctcaaat |
15239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 3197 - 3147
Alignment:
| Q |
16 |
cactttgtagtgttagaagataattagcttgtggtttgctctaaaatggat |
66 |
Q |
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|||||||||||| || |||||| |||||||||| |||||||||||||||| |
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| T |
3197 |
cactttgtagtggtataagatagctagcttgtggcttgctctaaaatggat |
3147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 4743 - 4693
Alignment:
| Q |
16 |
cactttgtagtgttagaagataattagcttgtggtttgctctaaaatggat |
66 |
Q |
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|||||||||||| || |||||| |||||||||| |||||||||||||||| |
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| T |
4743 |
cactttgtagtggtataagatagctagcttgtggcttgctctaaaatggat |
4693 |
T |
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