View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_high_14 (Length: 292)
Name: NF20976_high_14
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 390168 - 390380
Alignment:
| Q |
20 |
ctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttggcatagcttctgttactgctcctgtctacattg |
119 |
Q |
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| T |
390168 |
ctcatggctgctgcacctgatccttatgttctcatagcaggacgtcttctcgttggtttgggtgttggcatagcttctgttactgctcctgtctacattg |
390267 |
T |
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| Q |
120 |
cagaagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggtggacagtttgtttcctatcttgttaaccttgtttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
390268 |
cagaagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggtggacagtttgtttcctatcttgttaaccttgtttt |
390367 |
T |
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| Q |
220 |
cacccaggttagt |
232 |
Q |
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||||||||||||| |
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| T |
390368 |
cacccaggttagt |
390380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 390411 - 390447
Alignment:
| Q |
234 |
gattatgtgtgctttttctatcaacatgtttcatttt |
270 |
Q |
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| T |
390411 |
gattatgtgtgccttttctatcaacatgtttcatttt |
390447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 52771880 - 52771714
Alignment:
| Q |
23 |
atggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttggcatagcttctgttactgctcctgtctacattgcag |
122 |
Q |
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| T |
52771880 |
atggctgccgcgcctgatccttacattctcataatcggacgccttcttgttggtttaggtgtcggcattgcctctgtcaccgctcccgtctacattgccg |
52771781 |
T |
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| Q |
123 |
aagtcgcaccctctgaaatcagaggctcattagtcagcactaatgtcctcatgatcaccggtggaca |
189 |
Q |
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||| |||| || ||||||||||| ||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
52771780 |
aagcatcaccttccgaaatcagaggttcattagtcagtactaattccctcatgatcaccagtggaca |
52771714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 52768943 - 52768840
Alignment:
| Q |
21 |
tcatggctgctgcacctgatccttatgttctcatagcaggacgtcttcttgttggtttgggtgttggcatagcttctgttactgctcctgtctacattgc |
120 |
Q |
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||||||||||||| || ||||||||| |||||||| || ||| || | ||||||||||| || || |||||||| ||||||||||| || || ||||| |
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| T |
52768943 |
tcatggctgctgcgccagatccttatattctcatacttggccgtgttttggttggtttgggcgtgggtatagcttcagttactgctcccgtgtatattgc |
52768844 |
T |
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| Q |
121 |
agaa |
124 |
Q |
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|||| |
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|
| T |
52768843 |
agaa |
52768840 |
T |
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