View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_high_18 (Length: 261)
Name: NF20976_high_18
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 30361037 - 30360797
Alignment:
| Q |
10 |
cacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttccaaagaaattttaacaacc |
109 |
Q |
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| T |
30361037 |
cacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagactttttttaagcatgcgtattttcttcaaaagaaatttaaacaacc |
30360938 |
T |
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| Q |
110 |
aggacnnnnnnnncttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggacccaat |
209 |
Q |
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| T |
30360937 |
aggacttttttttcatttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggacccaat |
30360838 |
T |
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| Q |
210 |
cccagttccagagaaggtccgtaaaccccttacacaggttc |
250 |
Q |
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| T |
30360837 |
cccagttccagagaaggtccgcaaaccccttacacaggttc |
30360797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 19916433 - 19916201
Alignment:
| Q |
10 |
cacagatgagaaaatttaaggcgcaaccagtattaaaagagtgagcaatcaagacttttttt-aagcatgcgtattttcttccaaagaaattttaacaac |
108 |
Q |
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|||||||||||||||||||||| | |||||| ||||||||||| | ||| |||||||||| ||||||||||| |||||| |||||||||| ||| |
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| T |
19916433 |
cacagatgagaaaatttaaggcactgccagta--aaaagagtgagaattcaggacttttttttaagcatgcgtactttctttgaaagaaattt---aaac |
19916339 |
T |
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| Q |
109 |
caggac-nnnnnnnncttttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatctgaatgtaccttgcagggaccca |
207 |
Q |
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| T |
19916338 |
caatactttttttatcctttcgaagcatgcatattttcaatgatgatacaagtagtgagcctaaatttcttttcatatgaatgtaccttgcagggaccca |
19916239 |
T |
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| Q |
208 |
atcccagttccagagaaggtccgtaaaccccttacaca |
245 |
Q |
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| T |
19916238 |
atcccagttccagagaaggtccgcaaaccccttacaca |
19916201 |
T |
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