View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_high_2 (Length: 556)
Name: NF20976_high_2
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Complemental strand, 3894472 - 3893914
Alignment:
| Q |
1 |
tattactgccattcaattgttgcagttatactgtgggtgaccaatgtgattgtgcactgaaataaatgatgaagttaacttacgtctgattggttggaag |
100 |
Q |
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| T |
3894472 |
tattactgccattcaattgttgcagttatactgtgggtgaccaatgtgattgtgcactgaaataaatgatgaagttaacttacgtctgattggttggaag |
3894373 |
T |
|
| Q |
101 |
cagaagcaacgaagactctggagggtttaggaagggggagtgaaggtacgctagggaatgcctttgagaaccggaagattgcgtttctagtgatgaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3894372 |
cagaagcaacgaagactctggagggtttaggaagggggagtgaaggtacgctagggaatgcctttgagaaccggaagattgcgtttctagtgatgaacat |
3894273 |
T |
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| Q |
201 |
tgctgccatgtttctttctannnnnnnnn------------atttgtgtttgatatcacaatgtgtgttctttctatttctgtcatgaaatttgatcggt |
288 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
3894272 |
tgctgccatgtttctttctattttttttttttttttttaatatttgtgtttgatatcacaatgtgt----tttctatttcggtcatgaaatttgatcggt |
3894177 |
T |
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| Q |
289 |
ttataaagtgaacggtttgtcaccgatatacgaggactgcatgttagaagtaaaaggtggcaaacatgttgggttgccatgtgtacttaatttgccacgt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3894176 |
ttataaagtgaacggtttgtcaccgatatacgaggactgcatgttagaagtaaaaggtggcaaacatgttgggttgccatgtgtacttaatttgccacgt |
3894077 |
T |
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| Q |
389 |
ttgcttggacatctgccacgtgcttcaatgctggtagattgttttttgtggtgacgtgaaatgaaacttgtggacatcattgtcccatgtaatcctaact |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3894076 |
ttgcttggacatctgccacgtgcttcaatgctggtagattgttttttgtggtgacgtgaaatgaaacttgtggacatccttgtcccatgtaatcctaact |
3893977 |
T |
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| Q |
489 |
tatcttttcttgctctccatgtggattgtgtttgtggatcctctttgcataataattttcttc |
551 |
Q |
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| T |
3893976 |
tatcttttcttgctctccatgtggattgtgtttgtggatcctctttgcataataatattcttc |
3893914 |
T |
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