View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_high_21 (Length: 250)
Name: NF20976_high_21
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34432248 - 34432014
Alignment:
| Q |
1 |
ctatgtagcagtggtttgtgatcaagaggttgtgttacttcttggtgatctaaagaaagaagcttacagaagaactggatgtagaccatcactcattgat |
100 |
Q |
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| T |
34432248 |
ctatgtagcagtggtttgtgatcaagaggttgtgttacttcttggtgatctaaagaaagaagcttacagaagaactggatgtagaccatcactcattgat |
34432149 |
T |
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| Q |
101 |
ccaattcttgtttccaaaaaggaacacatatttggtaagaggaagttttcaactaaagctaagtttcatgagaaaggtaggtgtcatgagatttctataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432148 |
ccaattcttgtttccaaaaaggaacacatatttggtaagaggaagttttcaactaaagctaagtttcatgagaaaggtaggtgtcatgagatttctataa |
34432049 |
T |
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| Q |
201 |
agtgcaagaacaaaggaagtaatagtagtaataat |
235 |
Q |
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|||| ||||||||||||||||||||| |||||||| |
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| T |
34432048 |
agtgtaagaacaaaggaagtaatagtggtaataat |
34432014 |
T |
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 43403175 - 43402978
Alignment:
| Q |
1 |
ctatgtagcagtggtttgtgatcaagaggttgtgttacttcttggtgatctaaagaaagaagcttacagaagaactggatgtagaccatcactcattgat |
100 |
Q |
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||||||||| || ||||||||| |||||||||| | |||||||||||||| || ||||| ||||| |||||||| || ||||||||| | || |||||| |
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| T |
43403175 |
ctatgtagctgttgtttgtgatgaagaggttgttcttcttcttggtgatcttaaaaaagatgcttatagaagaacaggttgtagaccagctcttattgat |
43403076 |
T |
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| Q |
101 |
ccaattcttgtttccaaaaaggaacacatatttggtaagaggaagttttcaactaaagctaagtttcatgagaaaggtaggtgtcatgagatttctat |
198 |
Q |
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|| || | ||||| || || || || ||||||||||||| ||| || ||||| | |||||||||||||||||| |||| || |||||||||||||| |
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| T |
43403075 |
cctatattggtttcaaagaaagagcatatatttggtaagaagaaattctcaaccagagctaagtttcatgagaagggtaaatggcatgagatttctat |
43402978 |
T |
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