View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_high_25 (Length: 240)
Name: NF20976_high_25
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_high_25 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 50706357 - 50706139
Alignment:
| Q |
22 |
tttcacaaacaaattgtgaggactatctcgactcaccaaacaaataaacaaatggtgaacactacattgaatcaccaaacaaacaaatagagtttcagag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50706357 |
tttcacaaacaaattgtgaggactatctcgactcaccaaacaaataaacaaatagcgaacactacattgaatcaccaaacaaacaaatagagtttcagag |
50706258 |
T |
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| Q |
122 |
atattaacaaaggagacgtttatggcttattgcaatgacataacattataacgtggatttgatgccaaagctattatagatgtttacctagaaaattaat |
221 |
Q |
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| T |
50706257 |
atattaacaaaggagacgtttatggcttattgcaatgacataaccttataacgtggatttgatgccaaagctattatagatgtttacctagaaaattaat |
50706158 |
T |
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| Q |
222 |
taccgtgttagtcgaactc |
240 |
Q |
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||||||||||||||||||| |
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| T |
50706157 |
taccgtgttagtcgaactc |
50706139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 10741512 - 10741459
Alignment:
| Q |
55 |
caccaaacaaataaacaaatggtgaacactacattgaatcaccaaacaaacaaa |
108 |
Q |
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| T |
10741512 |
caccaaacaaacaaacaaattgtgaacactatcttgactcaccaaacaaacaaa |
10741459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 10741502 - 10741458
Alignment:
| Q |
26 |
acaaacaaattgtgaggactatctcgactcaccaaacaaataaac |
70 |
Q |
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| T |
10741502 |
acaaacaaattgtgaacactatcttgactcaccaaacaaacaaac |
10741458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 54147620 - 54147572
Alignment:
| Q |
26 |
acaaacaaattgtgaggactatctcgactcaccaaacaaataaacaaat |
74 |
Q |
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|||||| ||||||||||||||||| |||||||| ||||| |||||||| |
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| T |
54147620 |
acaaaccaattgtgaggactatcttgactcacctaacaaccaaacaaat |
54147572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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