View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20976_high_8 (Length: 364)

Name: NF20976_high_8
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20976_high_8
NF20976_high_8
[»] chr7 (12 HSPs)
chr7 (31-337)||(31540644-31540951)
chr7 (49-287)||(31573151-31573389)
chr7 (49-254)||(31532102-31532307)
chr7 (51-252)||(33305465-33305666)
chr7 (51-205)||(31439336-31439490)
chr7 (41-205)||(31608012-31608176)
chr7 (49-160)||(31594857-31594968)
chr7 (51-204)||(31585163-31585316)
chr7 (49-206)||(31575751-31575908)
chr7 (49-202)||(31618028-31618181)
chr7 (41-202)||(31614299-31614460)
chr7 (49-164)||(31604462-31604577)
[»] chr1 (1 HSPs)
chr1 (41-190)||(52174620-52174769)
[»] scaffold0394 (1 HSPs)
scaffold0394 (41-205)||(1697-1861)
[»] chr4 (2 HSPs)
chr4 (41-205)||(15063673-15063837)
chr4 (45-243)||(29083594-29083790)
[»] chr8 (1 HSPs)
chr8 (298-350)||(10378551-10378603)
[»] scaffold0254 (1 HSPs)
scaffold0254 (123-205)||(1751-1833)


Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 31 - 337
Target Start/End: Complemental strand, 31540951 - 31540644
Alignment:
Q  31 attgtttagtaatctcaaaggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctat 130  Q
    ||||||||| || |||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||   ||||||||||| ||    
T  31540951 attgtttagcaaactcaaaggaagaaaatgatatggtaagaatgattactatggtgagtctatggtgcattcaaacaaatccagccgatagaccatcaat 31540852  T
Q  131 gaatagagtaatagaaatgctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttca 230  Q
    || || |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  31540851 gagtaaagtattagaaatgctacaaggaccacttcagtcggtgccatatcctccaaagcctttcttatattctcctgcattgtcatcattgcaaacttca 31540752  T
Q  231 catgtgtcttctagcaatttgttagagaaaaactcaataccttaactgaagaatgattccataaaatcgaaaaagcttagcaatg-caaaagcgaaaatg 329  Q
     || ||||||| |||||||||||||||| |||||||  | | ||| ||||||||| |||||||||| |  | ||| | ||||| | |||||| |||||||    
T  31540751 tatttgtcttccagcaatttgttagagacaaactcagcatcctaattgaagaatggttccataaaaccagataagttcagcaaagacaaaagtgaaaatg 31540652  T
Q  330 tgattgta 337  Q
    ||||||||    
T  31540651 tgattgta 31540644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 49 - 287
Target Start/End: Original strand, 31573151 - 31573389
Alignment:
Q  49 aggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaat 148  Q
    ||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||| |||| || |||| |||||||    
T  31573151 aggaagaaactgatatggtaagaaagttaactatggttagtctatggtgcattcaaacgaacccattagatagaccatcgatgagtaaagtattagaaat 31573250  T
Q  149 gctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaat 248  Q
    |||||||||||||||| | |||||||| || |||||||||||| |  ||||||||||| ||||| |||||||||||| |||| ||| |||||| ||||||    
T  31573251 gctacaaggaccacttgattcagtgccataccctccaaagcctattctatattctcctaaaatgccatcattacaaagttcatatgcgtcttccagcaat 31573350  T
Q  249 ttgttagagaaaaactcaataccttaactgaagaatgat 287  Q
    |||||||||||||| |||||| | | |||||||||||||    
T  31573351 ttgttagagaaaaattcaataacattactgaagaatgat 31573389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 49 - 254
Target Start/End: Complemental strand, 31532307 - 31532102
Alignment:
Q  49 aggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaat 148  Q
    ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||  ||||||||||| |||| || ||||| ||||||    
T  31532307 aggaagaaaatgatatggtgagaaagattactatggtgagtttatggtgcattcaaacaaacccatccgatagaccatcaatgagtaaagtaacagaaat 31532208  T
Q  149 gctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaat 248  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||||| ||||||    
T  31532207 gctacaaggaccacttcagtcagtgccatatcctccaaagcctttcttatattctcctaaaattccatcagtacaaacttcatatgtgtcttccagcaat 31532108  T
Q  249 ttgtta 254  Q
     |||||    
T  31532107 atgtta 31532102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 51 - 252
Target Start/End: Original strand, 33305465 - 33305666
Alignment:
Q  51 gaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 150  Q
    ||||||||||||| || |||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||| |||| || ||| ||||||||||    
T  33305465 gaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatagaccatcaatgagtaaagtgatagaaatgc 33305564  T
Q  151 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaattt 250  Q
    | ||||||||||||  ||||||||| ||||| ||||| ||||||||||| |||||| ||| | |||||||||||| |||| |||||||||| | ||||||    
T  33305565 ttcaaggaccacttgggtcagtgccatatcccccaaaacctttcttatactctcctgaaaggccatcattacaaatttcatatgtgtcttccaacaattt 33305664  T
Q  251 gt 252  Q
    ||    
T  33305665 gt 33305666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 205
Target Start/End: Original strand, 31439336 - 31439490
Alignment:
Q  51 gaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 150  Q
    |||||||||||||  ||||  |||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| |||| || ||||||||||||||    
T  31439336 gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaacaaatccatcagagagaccatcaatgagtaaagtaatagaaatgc 31439435  T
Q  151 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 205  Q
    |||||||||||||||| ||| | || ||||||||||||||  |||||| ||||||    
T  31439436 tacaaggaccacttcattcaataccgtatcctccaaagcccgtcttattttctcc 31439490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 31608176 - 31608012
Alignment:
Q  41 aatctcaaaggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagta 140  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| | ||||||| ||||    
T  31608176 aatctcaacggaagaaaatgatatggttagaaagattactatggtgagtctatggtgcattcaaacgaatccatcagatagaccaccaatgaataaagta 31608077  T
Q  141 atagaaatgctacaaggaccact-tcagtcagtgccttatcctccaaagcctttcttatattctcc 205  Q
    ||||||||| | |||||||| || ||| |||||| | ||||||||||||||  |||||| ||||||    
T  31608076 atagaaatgttgcaaggaccgctgtca-tcagtgtcatatcctccaaagccggtcttattttctcc 31608012  T

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Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 31594968 - 31594857
Alignment:
Q  49 aggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaat 148  Q
    ||||||||||||||| ||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||    
T  31594968 aggaagaaaatgatatggttaaaaagattactatggtgagcctatggtgcattcaaacaaatccattagatagaccaccaatgaataaagtaattgaaat 31594869  T
Q  149 gctacaaggacc 160  Q
    ||||||||||||    
T  31594868 gctacaaggacc 31594857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 51 - 204
Target Start/End: Complemental strand, 31585316 - 31585163
Alignment:
Q  51 gaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 150  Q
    ||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||| |||||||  || |||||| | ||||||| |||||||||||||     
T  31585316 gaagaaaatgacatggttagaaagattactatggtaagtctatggtgcattcaaacgaatccatcggacagaccaccgatgaataaagtaatagaaatgt 31585217  T
Q  151 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctc 204  Q
    | ||||||||||||   |||||||| ||||||||||||||  |||||| |||||    
T  31585216 tgcaaggaccactttcatcagtgccatatcctccaaagcccgtcttattttctc 31585163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 31575908 - 31575751
Alignment:
Q  49 aggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaat 148  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||||||||| |||||||| || |||||||| || ||| | ||||||| ||||||||||||    
T  31575908 aggaagaaaatgatatggttagaaagattactttggtgagtctatggtgtattcaaaccaaaccattagacaggccaccgatgaataaagtaatagaaat 31575809  T
Q  149 gctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcct 206  Q
    | | ||||||||||||   || ||| | ||||||||||||||| |||||| |||||||    
T  31575808 gttgcaaggaccactttcctcggtgtcatatcctccaaagcctgtcttattttctcct 31575751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 202
Target Start/End: Complemental strand, 31618181 - 31618028
Alignment:
Q  49 aggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaat 148  Q
    ||||||||||||||| | | |||||||||||| |||| |||||||||||||||||||| || |||| |||||||||| | ||||||| ||||||||||||    
T  31618181 aggaagaaaatgatatgatcagaaagattactttggtgagtctatggtgcattcaaactaaaccatcagatagaccaccgatgaataaagtaatagaaat 31618082  T
Q  149 gctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattc 202  Q
    | | ||||||||||||   || ||  | ||||||||||||||| ||||||||||    
T  31618081 gttgcaaggaccactttcatcggtatcatatcctccaaagcctgtcttatattc 31618028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 31614460 - 31614299
Alignment:
Q  41 aatctcaaaggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagta 140  Q
    ||||||| ||||||||||||||| | | |||||||| ||| |||| ||| | |||||||||||||| || |||||||| |||||| | ||||||| ||||    
T  31614460 aatctcagaggaagaaaatgatatgattagaaagatcactttggtgagtgtttggtgcattcaaactaaaccattagacagaccaccgatgaataaagta 31614361  T
Q  141 atagaaatgctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattc 202  Q
    ||||||||| | ||||||||||||   || ||| | ||||||||||| || |||||| ||||    
T  31614360 atagaaatgttgcaaggaccactttcatcggtgtcatatcctccaaatcccttcttacattc 31614299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 164
Target Start/End: Complemental strand, 31604577 - 31604462
Alignment:
Q  49 aggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaat 148  Q
    ||||||||||||||| ||| |||||||||||| |||| ||||| ||| |||||||||| || | || |||||||||| | ||||||| ||||||||||||    
T  31604577 aggaagaaaatgatatggtcagaaagattactttggtgagtctgtggcgcattcaaactaaactatcagatagaccaccgatgaataaagtaatagaaat 31604478  T
Q  149 gctacaaggaccactt 164  Q
    | | ||||||||||||    
T  31604477 gttgcaaggaccactt 31604462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 190
Target Start/End: Original strand, 52174620 - 52174769
Alignment:
Q  41 aatctcaaaggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagta 140  Q
    ||||||| ||||||||||||||| ||| | |||||||||| |||| |||||||||||||||||||| || ||||  |||||||||   ||||||| ||||    
T  52174620 aatctcagaggaagaaaatgatatggttataaagattactttggtgagtctatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagta 52174719  T
Q  141 atagaaatgctacaaggaccacttcagtcagtgccttatcctccaaagcc 190  Q
    ||||||||| |  |||| ||||||   |||||||| ||||||||||||||    
T  52174720 atagaaatgttggaagggccactttcatcagtgccatatcctccaaagcc 52174769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 1861 - 1697
Alignment:
Q  41 aatctcaaaggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagta 140  Q
    ||||||| | ||||||||||||| | |||  ||||||||||||||  || | ||||| |||||||| ||||||| |||||| ||||| |||| || ||||    
T  1861 aatctcagaagaagaaaatgatatgctaaagaagattactatggtgggtttgtggtgtattcaaacgaatccatcagatagtccatcaatgagtaaagta 1762  T
Q  141 atagaaatgctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 205  Q
    ||||||||||| ||||| |||||||| ||| | |  ||||||||||||||| |||||| ||||||    
T  1761 atagaaatgctgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcc 1697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 205
Target Start/End: Original strand, 15063673 - 15063837
Alignment:
Q  41 aatctcaaaggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagta 140  Q
    ||||||| | ||||||||||||| | |||  ||||||||||||||   | | ||||| |||||||| ||||||| ||| |||||||| |||| || ||||    
T  15063673 aatctcagaagaagaaaatgatatgctaaagaagattactatggtggctttgtggtgtattcaaacgaatccatcagacagaccatcaatgagtaaagta 15063772  T
Q  141 atagaaatgctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 205  Q
    ||||||||||| ||||| |||||||| ||| | |  ||||||||||||||| |||||| ||||||    
T  15063773 atagaaatgctgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcc 15063837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 243
Target Start/End: Complemental strand, 29083790 - 29083594
Alignment:
Q  45 tcaaaggaagaaaatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatag 144  Q
    ||||||||||||||||||| ||| ||| ||||||| ||| | ||||||| || ||||||||| | | ||| |||||||||||| ||||    | ||||||    
T  29083790 tcaaaggaagaaaatgatatggtgagatagattacaatgatgagtctatcgtacattcaaacgatttcatgagatagaccatcaatga--gaaataatag 29083693  T
Q  145 aaatgctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttcta 243  Q
    ||| | ||||||||| ||||  ||||||| | |||| || ||||  |||||||||||||  | |||| ||||| ||||||| |||| |||||| |||||    
T  29083692 aaaagttacaaggacgacttatgtcagtggcatatcttctaaagtttttcttatattcttatgaaatatcatcgttacaaagttcatatgtgttttcta 29083594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 298 - 350
Target Start/End: Original strand, 10378551 - 10378603
Alignment:
Q  298 cgaaaaagcttagcaatgcaaaagcgaaaatgtgattgtatattgttggtaat 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378551 cgaaaaagcttagcaatgcaaaagcgaaaatgtgattgtatattgttggtaat 10378603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 205
Target Start/End: Complemental strand, 1833 - 1751
Alignment:
Q  123 ccatctatgaatagagtaatagaaatgctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 205  Q
    ||||| |||| || ||||||||||||||| ||||| |||||||| ||| | |  ||||||||||||||| |||||| ||||||    
T  1833 ccatcaatgagtaaagtaatagaaatgctgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcc 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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