View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_low_11 (Length: 357)
Name: NF20976_low_11
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 1330162 - 1330491
Alignment:
| Q |
12 |
ccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaa |
111 |
Q |
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||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330162 |
ccagcagtaggagctgaaagcacccaccgacccacaaaaatctcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaa |
1330261 |
T |
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| Q |
112 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccacctccaagacct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1330262 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccaactccaagacct |
1330361 |
T |
|
| Q |
212 |
tcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaataacccaaagtgccgcgtgccaaataag |
311 |
Q |
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| T |
1330362 |
tcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacccaaagtgccgcgtgccaaataag |
1330461 |
T |
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| Q |
312 |
caaaagaccattccggtgccgcttatttct |
341 |
Q |
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||||||||||||||||||| |||||||||| |
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| T |
1330462 |
caaaagaccattccggtgcagcttatttct |
1330491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 29083229 - 29083197
Alignment:
| Q |
128 |
aaggcatccttttgggttccaacaccattcata |
160 |
Q |
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| T |
29083229 |
aaggcattcttttgggttccaacaccattcata |
29083197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 14247373 - 14247698
Alignment:
| Q |
12 |
ccagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcgagaaaaa |
111 |
Q |
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||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
14247373 |
ccagcagtaggagctgacagcacccacggacccacataaaactcctccatgacacacaccagcaacagcgctgtcaatattcactgaaactcgaggaaaa |
14247472 |
T |
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| Q |
112 |
ac-tccaattatcaggtaaggcatccttttgggttccaacaccattcatagaataaacatgccgacactttagttctatccaacacccacctccaagac- |
209 |
Q |
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|| |||| ||||| |||||||| |||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| |
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| T |
14247473 |
acctccacttatcgcataaggcattcttttgggttccaacaccattcatagaacaaacacgttggcactttagttctatccaacacccacctccaagaca |
14247572 |
T |
|
| Q |
210 |
----cttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaataacccaaagtgccgcgtgcca |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |
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| T |
14247573 |
gtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaataacttaaagtgctgcgtgcca |
14247672 |
T |
|
| Q |
306 |
aataagcaaaagaccattccggtgcc |
331 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
14247673 |
aataagccaaagaccattccggtgcc |
14247698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 208 - 341
Target Start/End: Original strand, 9850600 - 9850733
Alignment:
| Q |
208 |
accttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaataacccaaagtgccgcgtgccaaa |
307 |
Q |
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||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
9850600 |
accttcacttcctccgccaattcctccaccctctttaccacattcataaagattaagctattcctagaattccaaataacccaaagtgccgtgtgccaaa |
9850699 |
T |
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| Q |
308 |
taagcaaaagaccattccggtgccgcttatttct |
341 |
Q |
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||||| |||||||||||| |||||| |||||||| |
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| T |
9850700 |
taagccaaagaccattccagtgccgtttatttct |
9850733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 9850274 - 9850424
Alignment:
| Q |
13 |
cagcagtaggagctgacagcacccaccgactcacaaaaaactcctccacgacacacaccagcaacagcgctgtcaatatacacagaaactcga-gaaaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||||||||||||| || | |||||| |||||| ||||||| ||| ||||||||| |||||| |
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| T |
9850274 |
cagcagtaggagctgacagcacccaccaacccacagaaaactcctccacggcatgtaacagcaatagcgctatcaatattcactgaaactcgaggaaaaa |
9850373 |
T |
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| Q |
112 |
actccaattatcaggtaaggcatccttttgggttccaacaccattcataga |
162 |
Q |
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|||||| ||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
9850374 |
actccacttatcgcataaggcattcttttgggttccaacaccattcataga |
9850424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 169
Target Start/End: Original strand, 7701528 - 7701561
Alignment:
| Q |
136 |
cttttgggttccaacaccattcatagaataaaca |
169 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
7701528 |
cttttgggttccaacatcattcatagaataaaca |
7701561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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