View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20976_low_12 (Length: 338)

Name: NF20976_low_12
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20976_low_12
NF20976_low_12
[»] chr1 (9 HSPs)
chr1 (1-332)||(52745038-52745377)
chr1 (297-338)||(32817826-32817867)
chr1 (298-338)||(49677397-49677437)
chr1 (296-338)||(38885141-38885183)
chr1 (296-338)||(42545870-42545912)
chr1 (297-338)||(18238240-18238281)
chr1 (298-338)||(45568092-45568132)
chr1 (296-338)||(40650891-40650933)
chr1 (297-334)||(45047041-45047078)
[»] chr7 (5 HSPs)
chr7 (296-338)||(3936010-3936052)
chr7 (297-338)||(9151723-9151764)
chr7 (296-338)||(42877260-42877302)
chr7 (297-338)||(42925856-42925897)
chr7 (298-331)||(5640022-5640055)
[»] chr3 (7 HSPs)
chr3 (296-338)||(35141979-35142021)
chr3 (298-338)||(47123010-47123050)
chr3 (298-338)||(47130376-47130416)
chr3 (299-338)||(38977963-38978002)
chr3 (296-334)||(51540835-51540873)
chr3 (297-338)||(4394137-4394178)
chr3 (297-338)||(34821611-34821652)
[»] chr2 (9 HSPs)
chr2 (296-338)||(41855099-41855141)
chr2 (296-335)||(17475014-17475053)
chr2 (296-338)||(45154001-45154043)
chr2 (297-338)||(32188080-32188121)
chr2 (297-334)||(33452657-33452694)
chr2 (296-336)||(27640525-27640565)
chr2 (298-333)||(39447061-39447096)
chr2 (297-338)||(35739545-35739586)
chr2 (296-337)||(42894346-42894387)
[»] chr5 (9 HSPs)
chr5 (297-338)||(31929320-31929361)
chr5 (297-338)||(38692998-38693039)
chr5 (303-338)||(37183997-37184032)
chr5 (296-338)||(6156595-6156637)
chr5 (296-334)||(23348392-23348430)
chr5 (296-338)||(28108246-28108288)
chr5 (296-333)||(40620210-40620247)
chr5 (296-334)||(20231079-20231117)
chr5 (297-338)||(31221533-31221574)
[»] chr8 (8 HSPs)
chr8 (296-338)||(40994721-40994763)
chr8 (297-338)||(31383246-31383287)
chr8 (298-338)||(8885668-8885708)
chr8 (298-338)||(27928314-27928354)
chr8 (296-336)||(773024-773064)
chr8 (297-332)||(23256849-23256884)
chr8 (297-336)||(28916680-28916719)
chr8 (296-338)||(42281109-42281151)
[»] chr6 (4 HSPs)
chr6 (297-338)||(7412731-7412772)
chr6 (296-334)||(21517695-21517733)
chr6 (297-338)||(10901921-10901962)
chr6 (301-338)||(14587775-14587812)
[»] chr4 (9 HSPs)
chr4 (297-338)||(19835431-19835472)
chr4 (296-338)||(7931571-7931613)
chr4 (296-338)||(35420766-35420808)
chr4 (296-338)||(53668766-53668808)
chr4 (296-338)||(53894206-53894248)
chr4 (298-338)||(17933352-17933392)
chr4 (297-338)||(18051149-18051190)
chr4 (297-338)||(40703574-40703615)
chr4 (296-333)||(48319284-48319321)
[»] scaffold0210 (1 HSPs)
scaffold0210 (296-338)||(8661-8703)
[»] scaffold0027 (1 HSPs)
scaffold0027 (296-338)||(142177-142219)
[»] scaffold0010 (1 HSPs)
scaffold0010 (296-338)||(140510-140552)
[»] scaffold0137 (1 HSPs)
scaffold0137 (296-338)||(9712-9754)
[»] scaffold0182 (1 HSPs)
scaffold0182 (297-334)||(23026-23063)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 52745377 - 52745038
Alignment:
Q  1 tcagcacctcagggcgtgttaggcaggtggcagtggagagtggggaagagggattggattcgtcagcattttgttggtttgtattgtcgggaagaggatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  52745377 tcagcacctcagggcgtgttaggcaggtggcagtggagagtggggaagagggattggatttgtcagcattttgttggtttggattgtcgggaagaggatt 52745278  T
Q  101 cattttcagtcacccactgactgacagagtctgcagagaaggatgcgccgcag------cagcttgacaatagacgaaactatagagggatactacgaca 194  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||      ||||||||||| |||||||||||||| ||||||||||||||    
T  52745277 cattttcagtcactcactgactgacagagtctgcacagaaggatgcgccgcagcagcagcagcttgacaagagacgaaactatagggggatactacgaca 52745178  T
Q  195 ctttatatactcca-nnnnnnnataatccctcttgtccccattattttatgactattacttttctcacccctacgtctttcctcacgcgcccaa--nnnn 291  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||  |||          
T  52745177 ctttatatactccattttttttataatccctcttgtccccattattttatgactattacttttct-aaccctacgtctttcctcgcgcgttcaatttttt 52745079  T
Q  292 nnnnccaaaattaccctcggagcattccggattatataatc 332  Q
         ||||||||||||||||||||||||||||||||||||    
T  52745078 tttttcaaaattaccctcggagcattccggattatataatc 52745038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 32817867 - 32817826
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32817867 caaaattaccctcggagcattccggattatataatccggaat 32817826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 49677397 - 49677437
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49677397 aaaattaccctcggagcattccggattatataatccggaat 49677437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 38885141 - 38885183
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  38885141 ccaaaattaccttcggagcattccggattatataatccggaat 38885183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 42545870 - 42545912
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  42545870 ccaaaattaccctcggagcattccagattatataatccggaat 42545912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 18238240 - 18238281
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  18238240 caaaattaccctcggagcattccagattatataatccggaat 18238281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 45568132 - 45568092
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  45568132 aaaattaccctcggagcatttcggattatataatccggaat 45568092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 40650933 - 40650891
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||| ||||||||||||| |||||||||||||||||    
T  40650933 ccaaaattaccttcggagcattccgaattatataatccggaat 40650891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 45047078 - 45047041
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccg 334  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  45047078 caaaattatcctcggagcattccagattatataatccg 45047041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 3936010 - 3936052
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3936010 ccaaaattaccctcggagcattccggattatataatccggaat 3936052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 9151723 - 9151764
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  9151723 caaaattaccctcgaagcattccggattatataatccggaat 9151764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 42877302 - 42877260
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  42877302 ccaaaagtaccctcagagcattccggattatataatccggaat 42877260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 42925897 - 42925856
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  42925897 caaaattaccctcggagcattccggatttcataatccggaat 42925856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 331
Target Start/End: Original strand, 5640022 - 5640055
Alignment:
Q  298 aaaattaccctcggagcattccggattatataat 331  Q
    ||||||||| ||||||||||||||||||||||||    
T  5640022 aaaattaccttcggagcattccggattatataat 5640055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 35141979 - 35142021
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35141979 ccaaaattaccctcggagcattccggattatataatccggaat 35142021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 47123010 - 47123050
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  47123010 aaaattaccctcggagcattccagattatataatctggaat 47123050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 47130376 - 47130416
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  47130376 aaaattaccctcggagcattccagattatataatctggaat 47130416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 38978002 - 38977963
Alignment:
Q  299 aaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  38978002 aaattacccttggagcattccggattatataatctggaat 38977963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 51540873 - 51540835
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccg 334  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  51540873 ccaaaattaccctcggagcattccagattttataatccg 51540835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 4394137 - 4394178
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  4394137 caaaattatcctcggagcattccagattatataatctggaat 4394178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 34821652 - 34821611
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||| || ||||| ||||||||||||||||||    
T  34821652 caaaattaccctcgtagtattccagattatataatccggaat 34821611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 41855141 - 41855099
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41855141 ccaaaattaccctcggagcattccggattatataatccggaat 41855099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 335
Target Start/End: Complemental strand, 17475053 - 17475014
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccgg 335  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17475053 ccaaaattaccctcggagcattccggattatataatccgg 17475014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 45154043 - 45154001
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  45154043 ccaaaattaccctcagagcattccggattatataatccggaat 45154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 32188121 - 32188080
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  32188121 caaaattaccctcggagcattccggattgtataatccggaat 32188080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 334
Target Start/End: Complemental strand, 33452694 - 33452657
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccg 334  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  33452694 caaaattaccctcggagtattccggattatataatccg 33452657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 27640565 - 27640525
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccgga 336  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  27640565 ccaaaactaccctcggagcattccggattataaaatccgga 27640525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 333
Target Start/End: Original strand, 39447061 - 39447096
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatcc 333  Q
    ||||||||| ||||||||||||||||||||||||||    
T  39447061 aaaattaccttcggagcattccggattatataatcc 39447096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 35739545 - 35739586
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||| | || ||||||||||||||||||||||||    
T  35739545 caaaattacccttgaagtattccggattatataatccggaat 35739586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 42894346 - 42894387
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaa 337  Q
    |||||||||  ||||||||||| |||||||||||||||||||    
T  42894346 ccaaaattattctcggagcatttcggattatataatccggaa 42894387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 31929361 - 31929320
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31929361 caaaattaccctcggagcattccggattatataatccggaat 31929320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 38693039 - 38692998
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38693039 caaaattaccctcggagcattccggattatataatccggaat 38692998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 338
Target Start/End: Complemental strand, 37184032 - 37183997
Alignment:
Q  303 taccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||||||||||||||||    
T  37184032 taccctcggagcattccggattatataatccggaat 37183997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 6156595 - 6156637
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  6156595 ccaaaattaccctcggagcattccggatttcataatccggaat 6156637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 23348392 - 23348430
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccg 334  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  23348392 ccaaaattaccctcggagcattccggattatgtaatccg 23348430  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 28108246 - 28108288
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    
T  28108246 ccaaaattatcctcggagcattccagattatataatccggaat 28108288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 40620247 - 40620210
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatcc 333  Q
    |||||||||||||||||||||||| |||||||||||||    
T  40620247 ccaaaattaccctcggagcattccagattatataatcc 40620210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 20231079 - 20231117
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccg 334  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  20231079 ccaaaattaccctcggagcattccagattatgtaatccg 20231117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 31221574 - 31221533
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||| ||||| |||||| ||||||||||||||||||||    
T  31221574 caaaattatcctcgaagcatttcggattatataatccggaat 31221533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 40994721 - 40994763
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  40994721 ccaaaattaccctcggagctttccggattatataatccggaat 40994763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 31383287 - 31383246
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  31383287 caaaattaccctcggagcattccgaattatataatccggaat 31383246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 8885708 - 8885668
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  8885708 aaaattaccctcggaccattccggattatataatccggaat 8885668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 27928354 - 27928314
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  27928354 aaaattaccctcggagcattccggattatataatcgggaat 27928314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 336
Target Start/End: Complemental strand, 773064 - 773024
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccgga 336  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  773064 ccaaaattaccctcggagcattccggaatatacaatccgga 773024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 23256884 - 23256849
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatc 332  Q
    |||||||||||||||||||||||||||||| |||||    
T  23256884 caaaattaccctcggagcattccggattatgtaatc 23256849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 28916680 - 28916719
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccgga 336  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  28916680 caaaattattctcggagcattccggattatataatccgga 28916719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 42281151 - 42281109
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||    
T  42281151 ccaaaattacccttggaacattccgaattatataatccggaat 42281109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 7412731 - 7412772
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  7412731 caaaattaccctcggagcattccggattatataatctggaat 7412772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 21517733 - 21517695
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccg 334  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  21517733 ccaaaattaccctcggagcattctggattttataatccg 21517695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 10901962 - 10901921
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||||||||||||||  |||||||||||| |||||    
T  10901962 caaaattaccctcggagcattctagattatataatctggaat 10901921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 14587812 - 14587775
Alignment:
Q  301 attaccctcggagcattccggattatataatccggaat 338  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  14587812 attatcctcggagcattccggattatataatctggaat 14587775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 19835431 - 19835472
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  19835431 caaaattactctcggagcattccggattatataatccggaat 19835472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 7931571 - 7931613
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  7931571 ccaaaattaccgtcagagcattccggattatataatccggaat 7931613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 35420766 - 35420808
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  35420766 ccaaaattacactcggagcattccggattatataatctggaat 35420808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 53668808 - 53668766
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  53668808 ccaaaattatcctcggagcaatccggattatataatccggaat 53668766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 53894248 - 53894206
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  53894248 ccaaaattatcctcggagcattccgaattatataatccggaat 53894206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 17933392 - 17933352
Alignment:
Q  298 aaaattaccctcggagcattccggattatataatccggaat 338  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  17933392 aaaattaccttcggagcattccggattatataatctggaat 17933352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 18051190 - 18051149
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||| |||||||||||||| |||||||||||| |||||    
T  18051190 caaaattatcctcggagcattccagattatataatctggaat 18051149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 40703574 - 40703615
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||| || |||||||| |||||    
T  40703574 caaaattaccctcggagcattccgaataatataatctggaat 40703615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 48319321 - 48319284
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatcc 333  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  48319321 ccaaaattaccctcgaagcattccggattatttaatcc 48319284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 8661 - 8703
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  8661 ccaaaattactctcggagcaatccggattatataatccggaat 8703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 142219 - 142177
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  142219 ccaaaattaccctcggagcattccagattatataattcggaat 142177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 140510 - 140552
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  140510 ccaaaattacccccggagcatttcggattatataatccggaat 140552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 338
Target Start/End: Complemental strand, 9754 - 9712
Alignment:
Q  296 ccaaaattaccctcggagcattccggattatataatccggaat 338  Q
    |||||||||||||||||||||||||||||  ||||| ||||||    
T  9754 ccaaaattaccctcggagcattccggatttcataattcggaat 9712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 23026 - 23063
Alignment:
Q  297 caaaattaccctcggagcattccggattatataatccg 334  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  23026 caaaattaccctcggagtattccagattatataatccg 23063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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