View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20976_low_13 (Length: 322)

Name: NF20976_low_13
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20976_low_13
NF20976_low_13
[»] chr7 (12 HSPs)
chr7 (9-295)||(31540644-31540931)
chr7 (17-245)||(31573161-31573389)
chr7 (9-212)||(31532102-31532305)
chr7 (9-210)||(33305465-33305666)
chr7 (9-163)||(31439336-31439490)
chr7 (9-163)||(31608012-31608166)
chr7 (9-162)||(31585163-31585316)
chr7 (9-118)||(31594857-31594966)
chr7 (9-164)||(31575751-31575906)
chr7 (9-160)||(31618028-31618179)
chr7 (9-122)||(31604462-31604575)
chr7 (9-160)||(31614299-31614450)
[»] scaffold0394 (1 HSPs)
scaffold0394 (9-163)||(1697-1851)
[»] chr8 (1 HSPs)
chr8 (256-308)||(10378551-10378603)
[»] chr1 (1 HSPs)
chr1 (9-148)||(52174630-52174769)
[»] chr4 (2 HSPs)
chr4 (9-163)||(15063683-15063837)
chr4 (9-201)||(29083594-29083784)
[»] scaffold0254 (1 HSPs)
scaffold0254 (81-163)||(1751-1833)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 31540931 - 31540644
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||   ||||||||||| |||| || |||| |||||||||    
T  31540931 gaagaaaatgatatggtaagaatgattactatggtgagtctatggtgcattcaaacaaatccagccgatagaccatcaatgagtaaagtattagaaatgc 31540832  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaattt 208  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  | |||||||||| ||||||||| || ||||||| ||||||||    
T  31540831 tacaaggaccacttcagtcggtgccatatcctccaaagcctttcttatattctcctgcattgtcatcattgcaaacttcatatttgtcttccagcaattt 31540732  T
Q  209 gttagagaaaaactcaataccttaactgaagaatgattccataaaatcgaaaaagcttagcaatg-caaaagcgaaaatgtgattgta 295  Q
    |||||||| |||||||  | | ||| ||||||||| |||||||||| |  | ||| | ||||| | |||||| |||||||||||||||    
T  31540731 gttagagacaaactcagcatcctaattgaagaatggttccataaaaccagataagttcagcaaagacaaaagtgaaaatgtgattgta 31540644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 31573161 - 31573389
Alignment:
Q  17 tgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgctacaagga 116  Q
    ||||| |||||||||| | ||||||||||||||||||||||||||||| || ||||||||||||||||| |||| || |||| |||||||||||||||||    
T  31573161 tgatatggtaagaaagttaactatggttagtctatggtgcattcaaacgaacccattagatagaccatcgatgagtaaagtattagaaatgctacaagga 31573260  T
Q  117 ccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaatttgttagaga 216  Q
    |||||| | |||||||| || |||||||||||| |  ||||||||||| ||||| |||||||||||| |||| ||| |||||| ||||||||||||||||    
T  31573261 ccacttgattcagtgccataccctccaaagcctattctatattctcctaaaatgccatcattacaaagttcatatgcgtcttccagcaatttgttagaga 31573360  T
Q  217 aaaactcaataccttaactgaagaatgat 245  Q
    |||| |||||| | | |||||||||||||    
T  31573361 aaaattcaataacattactgaagaatgat 31573389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 31532305 - 31532102
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||  ||||||||||| |||| || ||||| ||||||||    
T  31532305 gaagaaaatgatatggtgagaaagattactatggtgagtttatggtgcattcaaacaaacccatccgatagaccatcaatgagtaaagtaacagaaatgc 31532206  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaattt 208  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||| ||||||||||| |||||||||| |||||| |    
T  31532205 tacaaggaccacttcagtcagtgccatatcctccaaagcctttcttatattctcctaaaattccatcagtacaaacttcatatgtgtcttccagcaatat 31532106  T
Q  209 gtta 212  Q
    ||||    
T  31532105 gtta 31532102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 33305465 - 33305666
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| || |||||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||||| |||| || ||| ||||||||||    
T  33305465 gaagaaaatgatatggcaagaaagattactatgattagtctttggtgcattcaaacgaatccatcagatagaccatcaatgagtaaagtgatagaaatgc 33305564  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttctagcaattt 208  Q
    | ||||||||||||  ||||||||| ||||| ||||| ||||||||||| |||||| ||| | |||||||||||| |||| |||||||||| | ||||||    
T  33305565 ttcaaggaccacttgggtcagtgccatatcccccaaaacctttcttatactctcctgaaaggccatcattacaaatttcatatgtgtcttccaacaattt 33305664  T
Q  209 gt 210  Q
    ||    
T  33305665 gt 33305666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 31439336 - 31439490
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| ||||||  ||||  |||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||| |||| || ||||||||||||||    
T  31439336 gaagaaaatgatatcgtaaagaagattactatggtgagtttatggtgcattcaaacaaatccatcagagagaccatcaatgagtaaagtaatagaaatgc 31439435  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 163  Q
    |||||||||||||||| ||| | || ||||||||||||||  |||||| ||||||    
T  31439436 tacaaggaccacttcattcaataccgtatcctccaaagcccgtcttattttctcc 31439490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 31608166 - 31608012
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| | ||||||| |||||||||||||     
T  31608166 gaagaaaatgatatggttagaaagattactatggtgagtctatggtgcattcaaacgaatccatcagatagaccaccaatgaataaagtaatagaaatgt 31608067  T
Q  109 tacaaggaccact-tcagtcagtgccttatcctccaaagcctttcttatattctcc 163  Q
    | |||||||| || ||| |||||| | ||||||||||||||  |||||| ||||||    
T  31608066 tgcaaggaccgctgtca-tcagtgtcatatcctccaaagccggtcttattttctcc 31608012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 31585316 - 31585163
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||| | ||| ||||||||||||||||| |||||||||||||||||||| |||||||  || |||||| | ||||||| |||||||||||||     
T  31585316 gaagaaaatgacatggttagaaagattactatggtaagtctatggtgcattcaaacgaatccatcggacagaccaccgatgaataaagtaatagaaatgt 31585217  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctc 162  Q
    | ||||||||||||   |||||||| ||||||||||||||  |||||| |||||    
T  31585216 tgcaaggaccactttcatcagtgccatatcctccaaagcccgtcttattttctc 31585163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 31594966 - 31594857
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| ||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||||    
T  31594966 gaagaaaatgatatggttaaaaagattactatggtgagcctatggtgcattcaaacaaatccattagatagaccaccaatgaataaagtaattgaaatgc 31594867  T
Q  109 tacaaggacc 118  Q
    ||||||||||    
T  31594866 tacaaggacc 31594857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 31575906 - 31575751
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| ||| |||||||||||| |||| ||||||||||| |||||||| || |||||||| || ||| | ||||||| |||||||||||||     
T  31575906 gaagaaaatgatatggttagaaagattactttggtgagtctatggtgtattcaaaccaaaccattagacaggccaccgatgaataaagtaatagaaatgt 31575807  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcct 164  Q
    | ||||||||||||   || ||| | ||||||||||||||| |||||| |||||||    
T  31575806 tgcaaggaccactttcctcggtgtcatatcctccaaagcctgtcttattttctcct 31575751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 31618179 - 31618028
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| | | |||||||||||| |||| |||||||||||||||||||| || |||| |||||||||| | ||||||| |||||||||||||     
T  31618179 gaagaaaatgatatgatcagaaagattactttggtgagtctatggtgcattcaaactaaaccatcagatagaccaccgatgaataaagtaatagaaatgt 31618080  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattc 160  Q
    | ||||||||||||   || ||  | ||||||||||||||| ||||||||||    
T  31618079 tgcaaggaccactttcatcggtatcatatcctccaaagcctgtcttatattc 31618028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 31604575 - 31604462
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| ||| |||||||||||| |||| ||||| ||| |||||||||| || | || |||||||||| | ||||||| |||||||||||||     
T  31604575 gaagaaaatgatatggtcagaaagattactttggtgagtctgtggcgcattcaaactaaactatcagatagaccaccgatgaataaagtaatagaaatgt 31604476  T
Q  109 tacaaggaccactt 122  Q
    | ||||||||||||    
T  31604475 tgcaaggaccactt 31604462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 31614450 - 31614299
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| | | |||||||| ||| |||| ||| | |||||||||||||| || |||||||| |||||| | ||||||| |||||||||||||     
T  31614450 gaagaaaatgatatgattagaaagatcactttggtgagtgtttggtgcattcaaactaaaccattagacagaccaccgatgaataaagtaatagaaatgt 31614351  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattc 160  Q
    | ||||||||||||   || ||| | ||||||||||| || |||||| ||||    
T  31614350 tgcaaggaccactttcatcggtgtcatatcctccaaatcccttcttacattc 31614299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 1851 - 1697
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| | |||  ||||||||||||||  || | ||||| |||||||| ||||||| |||||| ||||| |||| || ||||||||||||||    
T  1851 gaagaaaatgatatgctaaagaagattactatggtgggtttgtggtgtattcaaacgaatccatcagatagtccatcaatgagtaaagtaatagaaatgc 1752  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 163  Q
    | ||||| |||||||| ||| | |  ||||||||||||||| |||||| ||||||    
T  1751 tgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcc 1697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 10378551 - 10378603
Alignment:
Q  256 cgaaaaagcttagcaatgcaaaagcgaaaatgtgattgtatattgttggtaat 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10378551 cgaaaaagcttagcaatgcaaaagcgaaaatgtgattgtatattgttggtaat 10378603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 52174630 - 52174769
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| ||| | |||||||||| |||| |||||||||||||||||||| || ||||  |||||||||   ||||||| |||||||||||||     
T  52174630 gaagaaaatgatatggttataaagattactttggtgagtctatggtgcattcaaacgaaaccatcggatagaccacagatgaataaagtaatagaaatgt 52174729  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcc 148  Q
    |  |||| ||||||   |||||||| ||||||||||||||    
T  52174730 tggaagggccactttcatcagtgccatatcctccaaagcc 52174769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 15063683 - 15063837
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| | |||  ||||||||||||||   | | ||||| |||||||| ||||||| ||| |||||||| |||| || ||||||||||||||    
T  15063683 gaagaaaatgatatgctaaagaagattactatggtggctttgtggtgtattcaaacgaatccatcagacagaccatcaatgagtaaagtaatagaaatgc 15063782  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 163  Q
    | ||||| |||||||| ||| | |  ||||||||||||||| |||||| ||||||    
T  15063783 tgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcc 15063837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 29083784 - 29083594
Alignment:
Q  9 gaagaatatgatacggtaagaaagattactatggttagtctatggtgcattcaaacaaatccattagatagaccatctatgaatagagtaatagaaatgc 108  Q
    |||||| |||||| ||| ||| ||||||| ||| | ||||||| || ||||||||| | | ||| |||||||||||| ||||  |   ||||||||| |     
T  29083784 gaagaaaatgatatggtgagatagattacaatgatgagtctatcgtacattcaaacgatttcatgagatagaccatcaatgagaaa--taatagaaaagt 29083687  T
Q  109 tacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcctcaaatgtcatcattacaaacttcacatgtgtcttcta 201  Q
    ||||||||| ||||  ||||||| | |||| || ||||  |||||||||||||  | |||| ||||| ||||||| |||| |||||| |||||    
T  29083686 tacaaggacgacttatgtcagtggcatatcttctaaagtttttcttatattcttatgaaatatcatcgttacaaagttcatatgtgttttcta 29083594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 1833 - 1751
Alignment:
Q  81 ccatctatgaatagagtaatagaaatgctacaaggaccacttcagtcagtgccttatcctccaaagcctttcttatattctcc 163  Q
    ||||| |||| || ||||||||||||||| ||||| |||||||| ||| | |  ||||||||||||||| |||||| ||||||    
T  1833 ccatcaatgagtaaagtaatagaaatgctgcaagggccacttcattcaatacaatatcctccaaagcctatcttattttctcc 1751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University