View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_low_17 (Length: 288)
Name: NF20976_low_17
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 27847132 - 27846876
Alignment:
| Q |
13 |
aatataccattcattcgatgcatgtgtaaaatgacttgacggtttacactatcaacacagtaaagtaattaaactcaacttatttaaaccattcacatgt |
112 |
Q |
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| T |
27847132 |
aatataccattcattcgatg-at-tgtaaaatgacttgacggtttacactatcaacacagtaaagtaattaaactcaacttatttaaaccattcacatgt |
27847035 |
T |
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| Q |
113 |
tttacttcactccctttcacttcctacacaaccaaacgaagcttgaaccttaaacaacgttacacaatccccaaattcccgtttgatctatgctctattc |
212 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27847034 |
tttacttcactccgtttcacttcctacacaaccaaacgaagcttgaaccttaaacaacgttacacaatccccaaattcccgtttgatctatgctctattc |
27846935 |
T |
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| Q |
213 |
atagcttcatcatcatcatcacagtaacctcttccttctccttttccattcccaatccc |
271 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27846934 |
atagcttcatcatcaccatcacagtaacctcttccttctccttttccattcccaatccc |
27846876 |
T |
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