View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_low_19 (Length: 266)
Name: NF20976_low_19
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 7590176 - 7589945
Alignment:
| Q |
18 |
cacctaaccaaacctaaaagcttttctcctaaacctattactattgtcacaacacgtgatcccaaaacttcaactgaattgaagcgccgccgaaacaatg |
117 |
Q |
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| T |
7590176 |
caccaaaccaaacctaaaagcttttctcctaaacctattactgttgtcacaacacgtgatcccaaaacttcaactgaattgaagtgccgccgaaacaatg |
7590077 |
T |
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| Q |
118 |
atgataatgatgacccactcattgcaagtctctctctcacccctaaaacctttaccagcggtcccacacaaccaactaagcttatcaccaaagaacctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7590076 |
atgataatgatgacccactcattgcaagtctctctctcacccctaaaacctttaccagtggtcccacacaaccaactaagcttatcaccaaagaacctat |
7589977 |
T |
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| Q |
218 |
cctacaaagagccacgcaagatgtgaattccc |
249 |
Q |
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||||||||||| |||||||||||||||||||| |
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| T |
7589976 |
cctacaaagagtcacgcaagatgtgaattccc |
7589945 |
T |
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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 26711255 - 26711088
Alignment:
| Q |
18 |
cacctaaccaaacctaaaagcttttctcctaaacctattactattgtcacaacacgtgatcccaaaacttcaactgaattgaagcgccgccgaaacaatg |
117 |
Q |
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|||| ||||||| ||||||| | |||||| ||||||| || || | ||||||| ||||||||||| | ||| ||| |||||||||||||||| |||| |
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| T |
26711255 |
caccaaaccaaaattaaaagccatcctcctagacctattccttatgacgcaacacgcgatcccaaaaccttaacagaactgaagcgccgccgaaataatg |
26711156 |
T |
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| Q |
118 |
atgataatgatgacccactcattgcaagtctctctctcacccctaaaacctttaccagcggtcccacaca |
187 |
Q |
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| T |
26711155 |
aggacaatgatgattcaatcattgcaa--ctctctctcactcctaaaagctttaccaccgatcccacaca |
26711088 |
T |
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