View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_low_21 (Length: 256)
Name: NF20976_low_21
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_21 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 28939654 - 28939870
Alignment:
| Q |
25 |
tatatagttatggtaaagaagagagaatgaaaatacttttgagattgcaaaaaagattgtcgctgacaaattgagaagcttcagctccaccatgaccatc |
124 |
Q |
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| T |
28939654 |
tatatagttatggtaaagaagagagaatgaaaatacttttgagattgcaaaaaagattgtcactgacaaattgagaagcttcagctccaccatgaccatc |
28939753 |
T |
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| Q |
125 |
ataaacaccaataaaagtcccttgaggacccaaatggttagaactcaaaggtccagactcaaattcacttctatcctccaatgaactattagcttgaatc |
224 |
Q |
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| T |
28939754 |
ataaacaccaataaaagtcccttgaggacccaaatggttagaactcaaaggtccagactcaaattcacttctatcctccaatgaactattagcttgaatc |
28939853 |
T |
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| Q |
225 |
acagccattgaaaattc |
241 |
Q |
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| T |
28939854 |
acagccattgaaaattc |
28939870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 40327273 - 40327457
Alignment:
| Q |
57 |
atacttttgagattgcaaaaaagattgtcgctgacaaattgagaagcttcagctccaccatgaccatcataaacaccaataaaagtcccttgaggaccca |
156 |
Q |
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| T |
40327273 |
atactcttgaaattggagaatagattgtcattaacaaactgagaagctgcagttccaccatgaccatcataaacacctataaaggttccttgaggaccca |
40327372 |
T |
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| Q |
157 |
aatggttagaactcaaaggtccagactcaaattcacttctatcctccaatgaactattagcttgaatcacagccattgaaaattc |
241 |
Q |
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| T |
40327373 |
aataatcagaactcataggtcctgattcaagttggctacgatcctccaacgaactatttgcttgaattacagccattgaaaattc |
40327457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 73516 - 73558
Alignment:
| Q |
98 |
agaagcttcagctccaccatgaccatcataaacaccaataaaa |
140 |
Q |
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| T |
73516 |
agaagcttcaggaccaccatgaccatcataaacaccaacaaaa |
73558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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