View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_low_26 (Length: 244)
Name: NF20976_low_26
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 34432607 - 34432380
Alignment:
| Q |
17 |
caagactcaattggaattcctgcatgtttctcttctgcaagtgatgatcatcgtcatcatggagctgtgatacgttcaggtaaaaccgtttacatgtcag |
116 |
Q |
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| T |
34432607 |
caagactcaattggaattcctgcatgtttctcttctgcaagtgatgatcatcatcatcatggagctgtgatacgttcaggtaaaaccgtttacatgtcag |
34432508 |
T |
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| Q |
117 |
tatacagaacaaagttagctggtcactgcagtttgatcacaatcacatggtgcaaaaacttgatgcttcatggcttatcagtaacagtggaaaaccctga |
216 |
Q |
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| T |
34432507 |
tatacagaacaaagttagctggtcactgccgtttgatcacaatcacatggtgcaaaaacttgatgcttcatggcttatcagtaacagtggaaaaccctga |
34432408 |
T |
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| Q |
217 |
aaaggaaactcaatatagctgcaaggtt |
244 |
Q |
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| T |
34432407 |
aaaggaaactcaatatagctgcaaggtt |
34432380 |
T |
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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 43403447 - 43403365
Alignment:
| Q |
107 |
tacatgtcagtatacagaacaaagttagctggtcactgcagtttgatcacaatcacatggtgcaaaaacttgatgcttcatgg |
189 |
Q |
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| T |
43403447 |
tacatgtcagtatacagaacaaaggtagctgatcattgccgtttgataaccatcacatggtgcaaaaacttgttgcttcatgg |
43403365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 26100060 - 26100171
Alignment:
| Q |
83 |
gtgatacgttcaggtaaaaccgtttacatgtcagtatacagaacaaagttagctggtcactgcagtttgatcacaatcacatggtgcaaaaacttgatgc |
182 |
Q |
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| T |
26100060 |
gtgacacgttgaggtagaaccgtttacatgtcagtatacagaagaatggtagatgatcactctcgtttgattacaatcacatagtgcgaaaacttgcttc |
26100159 |
T |
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| Q |
183 |
ttcatggcttat |
194 |
Q |
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||||||| |||| |
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| T |
26100160 |
ttcatggtttat |
26100171 |
T |
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