View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20976_low_3 (Length: 508)
Name: NF20976_low_3
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 234 - 491
Target Start/End: Complemental strand, 36752889 - 36752632
Alignment:
| Q |
234 |
catgcacacgtttaagaattgacttccgccaatttaagttatgcatgtgacttcagggcattattattggaagtgtctggtggaaatgctgaattcctag |
333 |
Q |
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| T |
36752889 |
catgcacacgtttaagaattgacttctgccaatttgagttatgcatgtgacttcagggcattattattggaagtgtctggtggaaatgctgaattcctag |
36752790 |
T |
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| Q |
334 |
tagatgcatggaagtgtctgtggaaataccaaattgctagtagatgcaaggcacagttacctagtaaactcatctcatccccttacttcactctcacaag |
433 |
Q |
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| T |
36752789 |
tagatgcatggaagtgtctgtggaaataccaaattgctagtagatgcaaggcacagttacctagtaaactcatctcatccccttacttcactctcacaag |
36752690 |
T |
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| Q |
434 |
ttaaattggtccaacagggttgacccctccaagcactatatatagaatatataaattg |
491 |
Q |
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| T |
36752689 |
ttaaattggtccaacagggttgacccctccaagcactatatatagaatatataaattg |
36752632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 36753106 - 36752953
Alignment:
| Q |
16 |
atcacgctgaaataaaaacgagcaagacaaaaatattagttataatatattactttgtttaagtttcttaatgagtttaattatagttgatttcactatg |
115 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36753106 |
atcacgctgaaataaaaacgagcaagacaaaaagattagttataatatattactttgtttaagtttcttaatgagttcaattatagttgatttcactatc |
36753007 |
T |
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| Q |
116 |
caaatgcaagtacttatttttgtcccttctttatctaaccttcagaaccaaatg |
169 |
Q |
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| T |
36753006 |
caaatgcaagtacttatttttgtcccttctttatctaaccttcagaaccaaatg |
36752953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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