View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20976_low_5 (Length: 438)
Name: NF20976_low_5
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 9399969 - 9399558
Alignment:
| Q |
19 |
gtttgatacgttggtggaaaggattattagtaaaagagaagagttgaggaagaacaaaggaaggaaggaaaataagggtgagcagggtgctgaattcaga |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9399969 |
gtttgatacattggtggaaaggattattagtaaaagagaagagttgaggaagaacaaaggaaggaaagaaaataagggtgagcaaggtgctgaattcaga |
9399870 |
T |
|
| Q |
119 |
gactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaagttcaaagggttcacatcaaggccttgattatggtaattaaattta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9399869 |
gactttcttgatatattgcttgattgtgccgaggatcaaaattcagaaataaaagttcaaagggttcacatcaaggccttgattatggtaattaaattta |
9399770 |
T |
|
| Q |
219 |
tcgctacttctttcttttatgtacaattcgta-atcaatgctcaaacgtttgttttggattttttcttactaaaaaatctagaagnnnnnnnnnnaagaa |
317 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9399769 |
tctctacttctttcttttatgtacaagtcgtatatcaatgctcaaatgtttgttttggattttttcttactaaaaaatctagaag-tatttttttaagaa |
9399671 |
T |
|
| Q |
318 |
caatatattgaag-----tatattgaacacacaattttatatgatccacagtaaaacttaattggtacggatttgaataacaaatattccctttgaaaaa |
412 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9399670 |
caatatattgaagtatattatattgaacacacaattttatatgatccacagtaaaacttaattggtacggatttgaataacaaatattccctttgaaaaa |
9399571 |
T |
|
| Q |
413 |
tattcattgatga |
425 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9399570 |
tattcattgatga |
9399558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 9382500 - 9382283
Alignment:
| Q |
19 |
gtttgatacgttggtggaaaggattattagtaaaagagaagagttgaggaagaacaaaggaaggaaggaaaataagggtgagcagggtgctgaattcaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
9382500 |
gtttgatacgttggtggaaaggattattactaagagagaagagttgaggaagaacaaaggaaggaaagaaaataagggtgagcaaggtgctgaattcaga |
9382401 |
T |
|
| Q |
119 |
gactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaagttcaaagggttcacatcaaggccttgattatggtaattaaattta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9382400 |
gactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaagttcaaagggttcacatcaaggccttgattatggtaattaaattta |
9382301 |
T |
|
| Q |
219 |
tcgctacttctttctttt |
236 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
9382300 |
tccctacttccttctttt |
9382283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 9382129 - 9382070
Alignment:
| Q |
366 |
aaacttaattggtacggatttgaataacaaatattccctttgaaaaatattcattgatga |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
9382129 |
aaacttaattggtacggatttgaataacaaatattcccttcgatacatattcattgatga |
9382070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 23243822 - 23243915
Alignment:
| Q |
116 |
agagactttcttgatatattgcttgattgtgctgaggatcaaaattcagaaataaaagttcaaagggttcacatcaaggccttgattatggtaa |
209 |
Q |
| |
|
||||||||||||||||| | ||||||| || |||||| ||| || || || ||| |||||||||||||| | ||||||||||||||||||| |
|
|
| T |
23243822 |
agagactttcttgatatcctacttgattatgtcgaggatgaaagctctgagatgaaaattcaaagggttcacgttaaggccttgattatggtaa |
23243915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 23243736 - 23243770
Alignment:
| Q |
18 |
agtttgatacgttggtggaaaggattattagtaaa |
52 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23243736 |
agtttgatacgttggtggaaaggattatttgtaaa |
23243770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University