View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20976_low_7 (Length: 404)
Name: NF20976_low_7
Description: NF20976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20976_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 238 - 386
Target Start/End: Original strand, 32101997 - 32102145
Alignment:
| Q |
238 |
ggaccgacggcttaaagaaagaaatgatcaacagtataagagaagagcttgaagagaaatggccatccttgaaaaagggtgtcacagatttttctttttg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32101997 |
ggaccgacggcttaaagaaagaaatgatcagaagtataagagaagagcttgaagagaaatgaccatccttgaaaaagggtgtcacagatttgtctttttg |
32102096 |
T |
|
| Q |
338 |
gcaacacgagtggaattctcatggaaaatgtagtggtttttctcaacta |
386 |
Q |
| |
|
|||||| |||||||| |||||| ||||| |||| ||||||||||||| |
|
|
| T |
32102097 |
gcaacatgagtggaacggtcatgggaaatgcagtgctttttctcaacta |
32102145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 168 - 384
Target Start/End: Complemental strand, 35726610 - 35726393
Alignment:
| Q |
168 |
ccgtgtggttgagaataaattctcaatccacggcctccggccagata-aaaatctcatcaacatgtctgcaggaccgacggcttaaagaaagaaatgatc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||| |||| |||| ||| || ||| |||| | | ||| ||||| | || ||||||| |
|
|
| T |
35726610 |
ccgtgtggttgagaataaattctcaatccagggcctctggctggatataaaacctcctctacaacactgctaaatcaacgacttaagggaaagaatgatc |
35726511 |
T |
|
| Q |
267 |
aacagtataagagaagagcttgaagagaaatggccatccttgaaaaagggtgtcacagatttttctttttggcaacacgagtggaattctcatggaaaat |
366 |
Q |
| |
|
| |||||||| |||||||||||||||||| | ||||||| |||||| | ||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
35726510 |
agaggtataagaaaagagcttgaagagaaattgtcatccttagaaaaggataccacagatttgcctttttgccaacacgagtggaacgctcatggaaaat |
35726411 |
T |
|
| Q |
367 |
gtagtggtttttctcaac |
384 |
Q |
| |
|
||| | ||||||||||| |
|
|
| T |
35726410 |
atagggatttttctcaac |
35726393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University