View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20977_high_2 (Length: 555)
Name: NF20977_high_2
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 30399332 - 30398782
Alignment:
| Q |
1 |
ttagtagactctggtgtacattgctgggtatgatgcagttgctgactcccaaacacggttctgacaagtagggttgcaagggtaggtacaatctatctca |
100 |
Q |
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| T |
30399332 |
ttagtagactctagtgtacattgctgggtatgatgcagttgctgactcccaaacacggttctgacaagtagggttgcaagggtaagtacagtctatctca |
30399233 |
T |
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| Q |
101 |
cgtgaaggacttctttcataaaaccagtctcctactgcctttgcaactgtctgcaaattatcaaccaaacaaaattatttgactcgtaaagggatgcgga |
200 |
Q |
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| T |
30399232 |
cgtgaaggacttctttcataaaaccagtctcctactgcctttgcaactgtctgcaaattatcaaccaaacaaaattatttgactcgtagagggatgcgga |
30399133 |
T |
|
| Q |
201 |
tttcttgcagtcatagaaaatatgttgcttcgatgtcaagttatttaaaccgttcgatgagatcagataacttgtattctaacttcaccaaaatcggctt |
300 |
Q |
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| T |
30399132 |
tttcttgcagtcatagaaaatatgttgcttcgatgtcaagttatttaaaccgttcgatgagatcagataacttgtattctaacttcactaaaatcggctt |
30399033 |
T |
|
| Q |
301 |
cataactcgaatacatgtcatttgatatgttatctaatggtcgagatccacacatttagttagggaaattataacatgttgtcacgaagtcaagttatct |
400 |
Q |
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| T |
30399032 |
cataactcgaatacaagtcatttgatattttatctaatggtcgagatccacacatttagttagggaaattaaaacatgttgtcacaaagtcaagttatct |
30398933 |
T |
|
| Q |
401 |
caaccattggatgaagattattcaccaaaccggcttcataat------------acaagtcgtcagatattcatctaatggtcgagatccttacatgtgg |
488 |
Q |
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| T |
30398932 |
caaccattagatgaagattattcaccaaaccggcttcataatacaacttgaaatacaagtcgtcggatattcatctaatggtcgagatccttacatgtgg |
30398833 |
T |
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| Q |
489 |
gaaaacgtgcgatcacaaagtcaagtgatctcaaccgttagaggaagatta |
539 |
Q |
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| T |
30398832 |
gaaaacgtgcggtcacgaagtcaagtgatctcaaccgttagaggaagatta |
30398782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 30389453 - 30389349
Alignment:
| Q |
51 |
aaacacggttctgacaagtagggttgcaagggtaggtacaatctatctcacgtgaaggacttctttcataaaaccagtctcctactgcctttgcaactgt |
150 |
Q |
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|||||||||| |||||||||||||||||||| || | ||||||||||| | ||| ||||| |||||| |||| |||||||| |||||||| | ||| |
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| T |
30389453 |
aaacacggttatgacaagtagggttgcaaggataaggacaatctatctgctgaaaagtgcttctatcataataccaatctcctacagcctttgctattgt |
30389354 |
T |
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| Q |
151 |
ctgca |
155 |
Q |
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| T |
30389353 |
ctgca |
30389349 |
T |
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