View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20977_high_5 (Length: 449)
Name: NF20977_high_5
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_high_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 55475089 - 55475506
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |
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|
| T |
55475089 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcattaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttat |
55475188 |
T |
|
| Q |
120 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55475189 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
55475288 |
T |
|
| Q |
220 |
aatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55475289 |
aatggatctagtatgcctaaccaatttcattttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
55475388 |
T |
|
| Q |
314 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55475389 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaatt |
55475488 |
T |
|
| Q |
414 |
gtgggttccataaacacc |
431 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
55475489 |
gtgggttccataaacacc |
55475506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 92152 - 92569
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| | |||||||||||| |
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|
| T |
92152 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatgaatttgggtaaaattgtttat |
92251 |
T |
|
| Q |
120 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
92252 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatatagaatttgagatctggaactattaccttaattttggtaat |
92351 |
T |
|
| Q |
220 |
aatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
92352 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
92451 |
T |
|
| Q |
314 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
92452 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaatt |
92551 |
T |
|
| Q |
414 |
gtgggttccataaacacc |
431 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
92552 |
gtgagttccataaacacc |
92569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 28 - 427
Target Start/End: Complemental strand, 41886235 - 41885830
Alignment:
| Q |
28 |
tcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttatccaacaac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
41886235 |
tcctttccttcatctctccatcttggtcttcatttttaaatcataaaagaacacaaaaatcacaactcatggatttgggcaaaattgtttatccaacaac |
41886136 |
T |
|
| Q |
128 |
ttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaataatagatc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41886135 |
ttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgatatctggaactattaccttaattttggtaataattgatc |
41886036 |
T |
|
| Q |
228 |
tagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctatgaaaccca |
321 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41886035 |
tagtatgcctaaccaatttttttttatcaacaaaaacgtgttattaatcaaaataacagaatactggtgagctacaatcagaaggaatctatgaaaccca |
41885936 |
T |
|
| Q |
322 |
tataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaattgtgggttc |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41885935 |
tataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaattgtgggttc |
41885836 |
T |
|
| Q |
422 |
cataaa |
427 |
Q |
| |
|
|||||| |
|
|
| T |
41885835 |
cataaa |
41885830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 27277482 - 27277065
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
27277482 |
aaccgtattcctttccttcatctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatgaatttgggcaaaattgtttat |
27277383 |
T |
|
| Q |
120 |
ccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27277382 |
ccaacaacttcatattctccctttcatcatttctctctcattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttggtaat |
27277283 |
T |
|
| Q |
220 |
aatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaatctat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27277282 |
aatagatctagtatgcctaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataacataatactggtgagctacaatcagaaggaatctat |
27277183 |
T |
|
| Q |
314 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttttaatt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27277182 |
gaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaaggtagaatattgtttttaatt |
27277083 |
T |
|
| Q |
414 |
gtgggttccataaacacc |
431 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27277082 |
gtgggttccataaacacc |
27277065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 431
Target Start/End: Complemental strand, 20901251 - 20900834
Alignment:
| Q |
20 |
aaccgtattcctttccttcatctctcc-----atcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattg |
114 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
20901251 |
aaccgtattcctttccctcatctctcctctccatcttggtcttcattttcaattcataaaagaacacaaaaatcacaactcatggatttgggcaaaattg |
20901152 |
T |
|
| Q |
115 |
tttatccaacaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctggaactattaccttaattttg |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20901151 |
tttatccaacaac---atattctccctttcatcatttctctcccat--atctaaaactctgatttagaatttgagatctggaactattaccttaattttg |
20901057 |
T |
|
| Q |
215 |
gtaataatagatctagtatgcctaaccaatttcattttatcaaca------tgctattaatcaaaataacagaatactggtgagctacaatcagaaggaa |
308 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
20901056 |
gtaataatagatctagtatgccgaaccaatttcattttatcaacaaaaacgtgctattaatcaaaataatagaatactggtaagctacaatcagaaggaa |
20900957 |
T |
|
| Q |
309 |
tctatgaaacccatataaatggagaaactatcatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttt |
408 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20900956 |
tctctgaaacccatataaatggagaaactattatgctacaaaaacaaacctaaacagaggattaggttctttaattagattgaagctagaatattgtttt |
20900857 |
T |
|
| Q |
409 |
taattgtgggttccataaacacc |
431 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
20900856 |
taattgtgggttccaaaaacacc |
20900834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 32 - 342
Target Start/End: Original strand, 48379610 - 48379951
Alignment:
| Q |
32 |
ttccttcatctctccatcttggtcttcattttcaaatcataaaagaacacaaaaatcacaactgatggatttgagcaaaattgtttatcc---------a |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||| ||| ||||| | |||||||||||||| | |
|
|
| T |
48379610 |
ttccttcatctctccatcttggtcttcattttcaattcatagaagaacacaaaaatcagaactcatgaatttgggtaaaattgtttatccaacaactgaa |
48379709 |
T |
|
| Q |
123 |
acaacttcatattctccctttcatcatttctctcccattcatctaaaactctgatttagaatttgagatctgga----------------actattacct |
206 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
48379710 |
acaacttcatattcaccctttcattctttctctcccattcaactaaaactctgatttagaaattgagatctggacaaccacaaatattgtagcattacct |
48379809 |
T |
|
| Q |
207 |
taattttggtaataatagatctagtatgcctaaccaatttcattttatc------aacatgctattaatcaaaataacagaatactggtgagctacaatc |
300 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||| |||||||| ||| | |||||||||||||||| ||| |||| ||||| ||||||| |
|
|
| T |
48379810 |
taattttcgtaataatagaactagtatgcctaatcaattttattttatcaccaaaaacgtcctattaatcaaaataatagagtactagtgagttacaatc |
48379909 |
T |
|
| Q |
301 |
agaaggaatctatgaaacccatataaatggagaaactatcat |
342 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
48379910 |
agaaggaatttatgaaacccatataaatggaaaaactatcat |
48379951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 37389305 - 37389257
Alignment:
| Q |
383 |
ttagattgaagctagaatattgtttttaattgtgggttccataaacacc |
431 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||||||||||||||| |
|
|
| T |
37389305 |
ttagattgaatccaaaatattgtttttaattgtgggttccataaacacc |
37389257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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