View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20977_high_7 (Length: 360)

Name: NF20977_high_7
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20977_high_7
NF20977_high_7
[»] chr4 (8 HSPs)
chr4 (5-360)||(25017923-25018275)
chr4 (5-219)||(25039175-25039386)
chr4 (118-228)||(4600708-4600818)
chr4 (118-248)||(4624826-4624956)
chr4 (293-359)||(25039077-25039141)
chr4 (284-360)||(4624749-4624823)
chr4 (155-211)||(25160529-25160585)
chr4 (125-186)||(25180792-25180853)
[»] chr2 (5 HSPs)
chr2 (126-224)||(18803706-18803804)
chr2 (284-360)||(18803831-18803905)
chr2 (148-195)||(42167707-42167754)
chr2 (130-196)||(42290147-42290213)
chr2 (130-195)||(42157212-42157277)
[»] chr3 (1 HSPs)
chr3 (152-213)||(9213235-9213296)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 360
Target Start/End: Complemental strand, 25018275 - 25017923
Alignment:
Q  5 ccaagaatattggcaagtaataacaaatgatgaatttattgtcacatccttcagttcacctagagtttcatctataggtaaatctttcatttatacgaac 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  25018275 ccaagaatattgccaagtaataacaaatgatgaatttattgtcacatccttcagttcacctagagtttcatctattggtgaatctttcatttatacgaac 25018176  T
Q  105 taactaacggctttaacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttga 204  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25018175 taactaacggcttaaacaaatatgcagaaggaaaagtaagtgcgggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttga 25018076  T
Q  205 taatggtaatgcataataatacatgcttcacaagtatatcatatatattcatgaagttcataatac-nnnnnnnnactaaatgatgttcataataatagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||         |||||||||||||||||||||||||    
T  25018075 taatggtaatgcataataatacatgcttcacaagtatatc----atattcatgaagttcataatactttttttttactaaatgatgttcataataatagt 25017980  T
Q  304 aatataaattgatggaattattggtatataggtctagtaccatttgtgacccttttt 360  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25017979 aatataaattgatggaattattggtatataggtctggtaccatttgtgacccttttt 25017923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 25039386 - 25039175
Alignment:
Q  5 ccaagaatattggcaagtaataacaaatgatgaatttattgtcacatccttcagttcacctagagtttcatctataggtaaatctttcatttatacgaac 104  Q
    |||||||||||| |||||||||||||||  ||||||||  ||||||||||| | |||||||| |||||||| | ||||| ||||||||||||| | ||||    
T  25039386 ccaagaatattgccaagtaataacaaatcttgaattta--gtcacatccttta-ttcacctaaagtttcatgtctaggtgaatctttcatttacatgaac 25039290  T
Q  105 taactaacggctttaacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttga 204  Q
    ||| |||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||    
T  25039289 taattaacagttttaacaaatatgcagaaggaaaagtaagtgaaggtataaaccaagaaggaatcaaatattacaacaacctgatcaatgaactacttga 25039190  T
Q  205 taatggtaatgcata 219  Q
    |||||||||||||||    
T  25039189 taatggtaatgcata 25039175  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 228
Target Start/End: Complemental strand, 4600818 - 4600708
Alignment:
Q  118 taacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgca 217  Q
    ||||||||||||||| |||||| ||||||  |||||||| ||||||||||||| || |||||||||||||||  |||||||||||| |||||||||| ||    
T  4600818 taacaaatatgcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgattgatgagctacttgctaatggtaataca 4600719  T
Q  218 taataatacat 228  Q
    |||||||||||    
T  4600718 taataatacat 4600708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 4624956 - 4624826
Alignment:
Q  118 taacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgca 217  Q
    ||||||||||||||  |||||| ||||||  ||| |||| |||| |||||||| || |||||| || |||||| |||||||||||| |||||||||||||    
T  4624956 taacaaatatgcagctggaaaaataagtgacggtgtaaaccaagcaggaatcatattttacaagaacctgatctatgagctacttgctaatggtaatgca 4624857  T
Q  218 taataatacatgcttcacaagtatatcatat 248  Q
    ||||| | ||| ||| |  ||||||||||||    
T  4624856 taatattccatactttattagtatatcatat 4624826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 25039141 - 25039077
Alignment:
Q  293 ataataatagtaatataaattgatggaattattggtatataggtctagtaccatttgtgaccctttt 359  Q
    ||||| ||||||||||||||||||||| ||||||  ||  |||||| ||||||||||||||||||||    
T  25039141 ataatcatagtaatataaattgatggacttattg--atccaggtctggtaccatttgtgaccctttt 25039077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 4624823 - 4624749
Alignment:
Q  284 atgatgttcataataatagtaatataaattgatggaattattggtatataggtctagtaccatttgtgacccttttt 360  Q
    |||||||||||| | ||| ||||||||||||||||||||||||  ||  ||||| | |||||| |||||||||||||    
T  4624823 atgatgttcatactcataataatataaattgatggaattattg--atccaggtcaaataccatatgtgacccttttt 4624749  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 25160585 - 25160529
Alignment:
Q  155 aatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggt 211  Q
    ||||||||||||||||| |||||||| ||||| ||||||||| |||| | |||||||    
T  25160585 aatcaagaaggaatcaactattacaataatctcatcaatgagttactagctaatggt 25160529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 25180853 - 25180792
Alignment:
Q  125 tatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatct 186  Q
    ||||||||||||||| |||||| ||| || ||||||||||||||  | |||||||| |||||    
T  25180853 tatgcagaaggaaaactaagtggaggaattaatcaagaaggaattgactattacaataatct 25180792  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 18803706 - 18803804
Alignment:
Q  126 atgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgcataataat 224  Q
    |||||||||||||| | ||||  |||| |||  |||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18803706 atgcagaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgagctacttgataatggtaatgcataataat 18803804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 18803831 - 18803905
Alignment:
Q  284 atgatgttcataataatagtaatataaattgatggaattattggtatataggtctagtaccatttgtgacccttttt 360  Q
    |||||||||||||| |||||||||||||||||  || ||||||  ||  |||||||||||||| |||||||||||||    
T  18803831 atgatgttcataatcatagtaatataaattgactgagttattg--atccaggtctagtaccatatgtgacccttttt 18803905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 42167754 - 42167707
Alignment:
Q  148 aggtataaatcaagaaggaatcaaatattacaacaatctgatcaatga 195  Q
    ||||||||| |||||||||||||||||||||||||| || ||||||||    
T  42167754 aggtataaaccaagaaggaatcaaatattacaacaacctcatcaatga 42167707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 42290147 - 42290213
Alignment:
Q  130 agaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgag 196  Q
    |||||||||| | | || ||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  42290147 agaaggaaaaattaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgag 42290213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 42157277 - 42157212
Alignment:
Q  130 agaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatga 195  Q
    |||||||||| | | || ||||||||| ||||||||| |||||||||||||||| || ||||||||    
T  42157277 agaaggaaaacttaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatga 42157212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 9213235 - 9213296
Alignment:
Q  152 ataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaa 213  Q
    |||||||||||||||||||| |||||||||||| | ||||||||| || | | |||||||||    
T  9213235 ataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa 9213296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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