View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20977_low_1 (Length: 621)
Name: NF20977_low_1
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 284 - 604
Target Start/End: Complemental strand, 38073205 - 38072893
Alignment:
| Q |
284 |
attagtcaagcaaacattttgtaccattaattaaactaaaaaagtctattatagtgttcctttaacacaccacacacccctcctaataagtcctaagtca |
383 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38073205 |
attagtcaagcaaacattttgtaccactaactaaactaaaaa-gtctattatagtgttcctttaacaccacacacacccctcctaataagtcctaagtca |
38073107 |
T |
|
| Q |
384 |
tgtaaaaacattgtatcatttccattaccaatcatttttccaattttttaaaaaccaacaaacaagcttggttaaacttaaaataaaatctcatactctt |
483 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
38073106 |
tgtaaaaacaatgtatcatttccattaccaatcatttttccaattttttaaaaaccaacaa----gcttggttaaacttaaaataa---ctcatactctt |
38073014 |
T |
|
| Q |
484 |
tgaatatatctccaatatgttgaatctcttcctgaaccgacaaccacattatcatggttcttcaacaatattaatattaaagatctcatgatctatcatg |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38073013 |
tgaatatatctccaatatgttgaatctcttcctgaaccgacaaccacattatcatggttcttcaacaatattaatattaaagatctcatgatctatcatg |
38072914 |
T |
|
| Q |
584 |
attttaattacatgattgata |
604 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38072913 |
attttaattacatgattgata |
38072893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 38073776 - 38073511
Alignment:
| Q |
11 |
cacagatactcacgattcttaaccgaccttataaaattcctacagctgtcttaagaatcattccacccactttcaatgttttcnnnnnnnnnnnnnnccg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | |
|
|
| T |
38073776 |
cacagatactcacgattcttaaccgaccttataaaattcctacagctgtcttaagaatcattccacccactttcaatgttgtcaaaaattaaaaaaac-g |
38073678 |
T |
|
| Q |
111 |
accttggaagtactccctcccttatcaaaaacaagcagcaaaagagttgtgttggttggtctcttaaatttcaaaccctaccnnnnnnntgacactgtac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38073677 |
accttggaagtactccctcccttatcaaaaacaagcagcaaaagagttgtgttggttggtctcttaaatttcaaaccctaccaaaaaaatgacactgtac |
38073578 |
T |
|
| Q |
211 |
aaataaatgttaagaatattcaagtaattcgcacctactaatgtaacattgaatagatttcttaata |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38073577 |
aaataaatgttaagaatattcaagtaattcgcacctactaatgtaacattgaatagatttcttaata |
38073511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University