View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20977_low_10 (Length: 320)
Name: NF20977_low_10
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 47840645 - 47840952
Alignment:
| Q |
1 |
ttttgtgttaattcctgttttataatgttccagatggcattaaggagtagaattagttttctatgttgttttactaccttttagttgtcctgcttctgct |
100 |
Q |
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| T |
47840645 |
ttttgtgttaattcctgttttataatgttccagatggcattgaggagtagaattagttttctatgttgttttactaccttttagttgtcctgcttctgct |
47840744 |
T |
|
| Q |
101 |
tttttctgtggggaatgtagtgcttcggtttgttttttatacgcacttcatggttattttgttcttaataaaattctggtcagtattaataaaattttgc |
200 |
Q |
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| T |
47840745 |
tttttctgtggggaatgtagtgcttcggtttgttttttatacgcacttcatggttattttgttcttaataaaattctgctcagtattaataaaattttgc |
47840844 |
T |
|
| Q |
201 |
ttataagaaaaaattattggaatgtttgctaannnnnnnnatattatgtaaaagcttcaatttaatatcatttacagatcatcaatgtgtatattacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47840845 |
ttataagaaaaaattattggaatgtttgctaattttttttatattatgtaaaagcttcaatttaatatcatttgcagatcatcaatgtgtatattacaaa |
47840944 |
T |
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| Q |
301 |
atatgatg |
308 |
Q |
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|||||||| |
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| T |
47840945 |
atatgatg |
47840952 |
T |
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