View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20977_low_11 (Length: 295)

Name: NF20977_low_11
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20977_low_11
NF20977_low_11
[»] chr4 (8 HSPs)
chr4 (66-277)||(25017588-25017801)
chr4 (104-268)||(25038704-25038868)
chr4 (146-232)||(4624400-4624486)
chr4 (150-199)||(25046756-25046805)
chr4 (153-212)||(25189367-25189426)
chr4 (150-232)||(4600152-4600234)
chr4 (150-232)||(24986320-24986402)
chr4 (150-232)||(25000761-25000843)
[»] chr5 (1 HSPs)
chr5 (153-223)||(30360889-30360959)
[»] chr2 (1 HSPs)
chr2 (152-232)||(42167215-42167295)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 25017801 - 25017588
Alignment:
Q  66 tgatagagttttatgacttagttgaccccacatggtgatatatggtttgattgctgacgtttttgttgttaatttctatatatat--gcagaaatgattt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  25017801 tgatagagttttatgacttagttgaccccacatggtgatatatggtttgattgctgacatttttgttgttaatttctatatatatatgcagaaatgattt 25017702  T
Q  164 tcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatgacccacatgtttacagtttgggttcagaacca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25017701 tcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatgacccacatgtttacagtttgggttcagaacca 25017602  T
Q  264 tacatggccacaca 277  Q
    ||||||||||||||    
T  25017601 tacatggccacaca 25017588  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 104 - 268
Target Start/End: Complemental strand, 25038868 - 25038704
Alignment:
Q  104 tatatggtttgattgctgacgtttttgttgttaatttctatatatatgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagac 203  Q
    |||||||||| |||||||| |||||||||||||| || |||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||     
T  25038868 tatatggtttcattgctgatgtttttgttgttaaattttatacatatgcagaaatgattttcaagactatgcagagctatgcttcaaggaattcggagat 25038769  T
Q  204 cgagtgaagcattggattaccttcaatgacccacatgtttacagtttgggttcagaaccatacat 268  Q
     |||||||||||||||||||||||||||| |||||   ||||||||||||||||||||| |||||    
T  25038768 agagtgaagcattggattaccttcaatgagccacactcttacagtttgggttcagaaccttacat 25038704  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 4624486 - 4624400
Alignment:
Q  146 tatatgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatga 232  Q
    |||||||||||| |||||| |||||| ||  ||  ||||||||||||||||||||||| | || ||||||||| |||| || |||||    
T  4624486 tatatgcagaaaagattttaaggactttgtggatatatgcttcaaggaatttggagacagtgtaaagcattgggttacttttaatga 4624400  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 25046805 - 25046756
Alignment:
Q  150 tgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttgg 199  Q
    ||||||||||||||| |||||||||| || || |||||||||||||||||    
T  25046805 tgcagaaatgattttaaggactatgctgatctttgcttcaaggaatttgg 25046756  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 25189426 - 25189367
Alignment:
Q  153 agaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaag 212  Q
    |||||||||||||  |||||||| || || ||||||||||||||||||||  ||||||||    
T  25189426 agaaatgattttcgagactatgctgatctttgcttcaaggaatttggagatagagtgaag 25189367  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 4600234 - 4600152
Alignment:
Q  150 tgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatga 232  Q
    ||||||||||||||| |||||| ||  ||| |||||||| | |||||||||||  |||| ||||||||| |||| || |||||    
T  4600234 tgcagaaatgattttaaggactttgtggagatatgcttccaagaatttggagatagagtaaagcattgggttacttttaatga 4600152  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 24986402 - 24986320
Alignment:
Q  150 tgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatga 232  Q
    |||||| |||||||| |||||||||| || || |||| |||||||||||| ||  | ||||| ||||||||||| || |||||    
T  24986402 tgcagagatgattttaaggactatgctgaactttgctacaaggaatttggtgatagggtgaaacattggattactttgaatga 24986320  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 25000761 - 25000843
Alignment:
Q  150 tgcagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatga 232  Q
    |||||| ||||||||  ||||||||| || || ||||||||||||||||| ||  | ||||| ||||||||||| || |||||    
T  25000761 tgcagagatgattttagggactatgctgaactttgcttcaaggaatttggcgatagggtgaaacattggattactttgaatga 25000843  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 30360889 - 30360959
Alignment:
Q  153 agaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattac 223  Q
    ||||||||||||| ||| || || ||||| ||||||||||||||||||||  |||||||| | ||||||||    
T  30360889 agaaatgattttcgggattacgcggagctttgcttcaaggaatttggagatagagtgaagtactggattac 30360959  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 42167295 - 42167215
Alignment:
Q  152 cagaaatgattttcaggactatgccgagctatgcttcaaggaatttggagaccgagtgaagcattggattaccttcaatga 232  Q
    ||||||||||||||| |||||||| || || || ||||| || ||||||||  | |||||| |||||||||| ||||||||    
T  42167295 cagaaatgattttcaagactatgcggaactttgtttcaaagagtttggagatagggtgaagtattggattactttcaatga 42167215  T

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