View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20977_low_3 (Length: 545)
Name: NF20977_low_3
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 529
Target Start/End: Original strand, 18891957 - 18892479
Alignment:
| Q |
13 |
tttgtttcataaaattaaaattacaattaaataatagacacgctctatcctcttcttctctgacggaaccaaaattcaagtagcatatacttccttcctt |
112 |
Q |
| |
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||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18891957 |
tttgtttaataaaattaaaattaaaattaaataatagacacgttctatcctcttcttctctggcggaaccaaaattcaagtagcatatacttccttcctt |
18892056 |
T |
|
| Q |
113 |
ccttcttttcttcaaaccccactctaactctgatgaatgacatgatggtatttgttgcttcttcctcttacaatatccttatttctcactttcttattta |
212 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18892057 |
ccttcttttcttcaaaccccactctgactctgatgaattatatgatggtatttgttgcttcttcctcttacaatatccttatttctcactttcttattta |
18892156 |
T |
|
| Q |
213 |
aatgcaacttgcccatcgattaaaatttcaatcttttctattgaacttttcgtggtacgtatatgtagattactggtgttgggtttttgccatcatgtaa |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18892157 |
aatgcagcttgcccatcgattaaaatttcaatcttttctattgaatttttcgtggtacgtatatgtagattactggtgttgggtttttgccatcatgtaa |
18892256 |
T |
|
| Q |
313 |
tcccttcatgaaaattatactccaactcccactttcaattacacatgtgcgcatatgtaatc------ttaggatttttcgatttctttgttttctgtct |
406 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
18892257 |
tcccttcatgaaaattatattccaactcccactttcaattacacatgtgcgcatatgtaatcccttcattaggatttttcaatttctttgttttctgtct |
18892356 |
T |
|
| Q |
407 |
ttaatggaatacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatgaagaataggttgtacagtagaccatgtgaca |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18892357 |
ttaatggaatacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatgaagaataggttgtacagtagaccatgtgaca |
18892456 |
T |
|
| Q |
507 |
aatgagtatggtttcttaataac |
529 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
18892457 |
aatgagtatggtttcttaataac |
18892479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 26630901 - 26630799
Alignment:
| Q |
112 |
tccttcttttcttcaaaccccactctaactctgatgaatgacatgatggtatttgttgcttcttcctcttacaatatccttatttctcactttcttattt |
211 |
Q |
| |
|
||||| ||| ||||| |||||||||||| ||| || ||| |||| ||| ||||| |||||||||||||||||||| | |||||||||||||||||| ||| |
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|
| T |
26630901 |
tccttgtttgcttcagaccccactctaattctaatcaattacatcatgatattttttgcttcttcctcttacaattttcttatttctcactttctttttt |
26630802 |
T |
|
| Q |
212 |
aaa |
214 |
Q |
| |
|
||| |
|
|
| T |
26630801 |
aaa |
26630799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 18897083 - 18897032
Alignment:
| Q |
13 |
tttgtttcataaaattaaaattacaattaaataatagacacgctctatcctc |
64 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
18897083 |
tttgtttaataaaattaaaattaaaattaaataatagacacgttctttcctc |
18897032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 21 - 529
Target Start/End: Original strand, 49263869 - 49264382
Alignment:
| Q |
21 |
ataaaattaaaattacaattaaataatagacacgctctatcctcttcttctctgacggaaccaaaattcaagtagcatatacttccttccttccttcttt |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
49263869 |
ataaaattaaaattaaaattaaataatagacacgttctatcctcttcttctctcgcggaaccaaaatccaagtagcatatacttccttccttccttcttt |
49263968 |
T |
|
| Q |
121 |
tcttcaaaccccactctaactctgatgaatgacatgatggtatttgttgcttcttcctcttacaatatccttatttctcactttcttatttaaatgcaac |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
49263969 |
tcttcaaaccccactctaactctgatgaattacatgatggtaattagtgcttcttcctcttacaatatccttgtttctcattttcttatttaaatgcaac |
49264068 |
T |
|
| Q |
221 |
ttgcccatcgattaaaatttcaatcttttctattgaacttttcgtggtacgtatatgtagattactggtgttgggtttttgccatcatgtaatcccttca |
320 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49264069 |
tt-cccatcgattaaaatttcaatcttttctattgaatttttcgtggtacgtatatgtagattactggtgttgggtttttgccatcatgtaatcccttca |
49264167 |
T |
|
| Q |
321 |
tgaaaattatactccaactcccactttcaattacacatgtgcgcatatgtaatc------ttaggatttttcgatttctttgttttctgtctttaatgga |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
49264168 |
tgaaaattatactccaactcccactttcaattacagttgtgcgcatatgtaatcccttcattaggatttttcaatttctttgttttctgtctttaatgga |
49264267 |
T |
|
| Q |
415 |
atacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatgaagaataggttgtacagtagaccatgtgacaaatgagta |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49264268 |
atacatgcacttttcttggtttgtttgctaaataaaaggcaatagaaattgcattggtatgaagaataggttgtacagtagaccatgtgacaaatgagta |
49264367 |
T |
|
| Q |
515 |
tggtttcttaataac |
529 |
Q |
| |
|
||||||||||||||| |
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|
| T |
49264368 |
tggtttcttaataac |
49264382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 49265096 - 49265046
Alignment:
| Q |
13 |
tttgtttcataaaattaaaattacaattaaataatagacacgctctatcctc |
64 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
49265096 |
tttgtttaataaaattaaaatta-aattaaataatagacacgttctttcctc |
49265046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 48528590 - 48528480
Alignment:
| Q |
104 |
tccttccttccttcttttcttcaaaccccactctaactctgatgaatgacatgatggtatttgttgcttcttcctcttacaatatccttatttctcactt |
203 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||||||| || ||| || | ||||||||| |||||||||| || |||||| |||||||||||||||| |
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|
| T |
48528590 |
tccttccttccttgtttgcttcagaccccactctaactctaatcaattacttaatggtattttttgcttcttcatcatacaatttccttatttctcactt |
48528491 |
T |
|
| Q |
204 |
tcttatttaaa |
214 |
Q |
| |
|
||||||||||| |
|
|
| T |
48528490 |
tcttatttaaa |
48528480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 59 - 214
Target Start/End: Original strand, 31844746 - 31844903
Alignment:
| Q |
59 |
atcctcttcttctctgacggaaccaaaattcaagtagcatatact---tccttccttccttcttttcttcaaaccccactctaactctgatgaatgacat |
155 |
Q |
| |
|
||||| ||||||||| || ||||||||| | || |||||||||| |||||||| |||| ||| ||||| |||||||||||| ||| || ||| |||| |
|
|
| T |
31844746 |
atccttttcttctctcaccgaaccaaaaccctagaagcatatactctatccttcct-ccttgtttgcttcagaccccactctaattctaatcaattacat |
31844844 |
T |
|
| Q |
156 |
gatggtatttgttgcttcttcctcttacaatatccttatttctcactttcttatttaaa |
214 |
Q |
| |
|
||| ||||| ||||||||||||||||||| | |||||||||||||||||| |||||| |
|
|
| T |
31844845 |
catgatattttttgcttcttcctcttacaaatttcttatttctcactttcttttttaaa |
31844903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 35411246 - 35411192
Alignment:
| Q |
160 |
gtatttgttgcttcttcctcttacaatatccttatttctcactttcttatttaaa |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
35411246 |
gtatttgttgcttcttcctcagacaatatccttatttttcactttcttatttaaa |
35411192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 1103661 - 1103550
Alignment:
| Q |
104 |
tccttccttccttcttttcttcaaaccccactctaactctgatgaatgacatga-tggtatttgttgcttcttcctcttacaatatccttatttctcact |
202 |
Q |
| |
|
||||||||||||| ||| | ||| |||||||||||||||| | ||| || | | |||||||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
1103661 |
tccttccttccttgtttgcgtcagaccccactctaactctaaccaattactttaatggtattttttgcttcttcctcatacaatttccttatttctcact |
1103562 |
T |
|
| Q |
203 |
ttcttatttaaa |
214 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1103561 |
ttcttatttaaa |
1103550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 43442467 - 43442386
Alignment:
| Q |
127 |
aaccccactctaactctgatgaatgacatgatggtatttgttgcttcttcctcttacaatatccttatttctcactttctta |
208 |
Q |
| |
|
||||||||||||| ||| || ||| |||| ||||||||| |||||||||||||||||| | | ||||||||| ||||||||| |
|
|
| T |
43442467 |
aaccccactctaattctaatcaattacatcatggtattttttgcttcttcctcttacatttttcttatttcttactttctta |
43442386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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