View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20977_low_4 (Length: 542)
Name: NF20977_low_4
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 147 - 523
Target Start/End: Complemental strand, 56442989 - 56442615
Alignment:
| Q |
147 |
tgaagtatgcaatgcatgaatccaatccaatccaatccaagtaaatctgcaacgtggcaaggagtgaggggtgatggcagcagcagcgataggagtgaga |
246 |
Q |
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| T |
56442989 |
tgaagtatgcaatgcatgaatccaatccaatccaa-----gtaaatttgcaacgtggcaaagagtgaggggtgatggcagcagtagcgataggagtgagg |
56442895 |
T |
|
| Q |
247 |
tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgttctgattattattacagaaaaagaagtagtagaatcaacgcttctt |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
56442894 |
tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgctctgattattattacagaagaagaagtagtagaatcaacgcttctt |
56442795 |
T |
|
| Q |
347 |
cattgttctggggatcttctaaggacaacaacaaacataataacatttcttcttctt---cttcatcgcatcagcaacaattcagcttcaatgtgaccac |
443 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
56442794 |
cattgttctggggatcttctaaggacaacaacaaacagaataacatttcttcttcttcttcttcatcgcatcagcaacaattcagcttcaatgttaccac |
56442695 |
T |
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| Q |
444 |
cacaacagaatctgaagaagataaagataagattattactgtttcttttgtatcttcaatttcagatattccatccaccc |
523 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56442694 |
cacaacagaatctgaagaagataaagataaaattattactgtttcttttgtatcttcaatttcagatattccatccaccc |
56442615 |
T |
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