View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20977_low_5 (Length: 520)
Name: NF20977_low_5
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 506
Target Start/End: Complemental strand, 26644457 - 26643967
Alignment:
| Q |
14 |
ggagcaatgtggatgagtccacagagtttttactagccaaacagaagagaatatggtcggagtctagataccgtatgaaactaataatcaatcaaaaaag |
113 |
Q |
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| T |
26644457 |
ggagcaatgtggatgagtccacagagtttttactagccaaagagaggagaatatggtcggagtctagataccgtatgaaactaataatcaatca-aaaag |
26644359 |
T |
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| Q |
114 |
tgcaagtgaatatgaattacaaaccttggaggttgaaatctgcactggactagtggcttcaactgctnnnnnnnnnnnnnnnnnngatattag-tttaaa |
212 |
Q |
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| T |
26644358 |
tgcaagtgaatatgaattacaaaccttggaggttgaaatctgcactggactagtggcttcaactgataaaaaaacaaacaaaaaatatattagttttaaa |
26644259 |
T |
|
| Q |
213 |
tgcaactcatatttgcaatttttgtccacaaacgataaaatcacagattttgttttcattaattatatatttttggtccttaaagttgtttttaagtttt |
312 |
Q |
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| T |
26644258 |
tgcaactcatatttgcaatttttgtccacaaacgataaaatcacagattttgttatcattaaat-tatatttttggtccttaaagttgtttttaagtttt |
26644160 |
T |
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| Q |
313 |
actctagtctgataaaaaaaacaaatacactttagtcctttnnnnnnnnnnttgtttcaattaaatcccttacatcacaaacattatacactttagtctc |
412 |
Q |
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| T |
26644159 |
actctagtctgat-aaaaaaacaaatacactttagtcctttaaaaaaaaaattgtttcaattaaatcccttacatcacaaacattatacactttagtctc |
26644061 |
T |
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| Q |
413 |
ataatgtaaatacaggctaaaatttgaaactatgcttaaacaatgaaatagatcaccaaaaagaagccactgactagtgacagtaactgatttt |
506 |
Q |
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| T |
26644060 |
ataatgtaaatacaggctaaaatttgaaactatgcttaaacaatgaaatagatcaccaaaaagaagccactgactagtgacagtaactgatttt |
26643967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 26658186 - 26658114
Alignment:
| Q |
87 |
tatgaaactaataatcaatcaaaaaagtgcaagtgaatatgaattacaaaccttggaggttgaaatctgcact |
159 |
Q |
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||||||| |||||| ||||||| ||||| |||||| | ||||||||||||||||||||| ||||||||||||| |
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| T |
26658186 |
tatgaaattaataaccaatcaacaaagtacaagtgcagatgaattacaaaccttggaggctgaaatctgcact |
26658114 |
T |
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