View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20977_low_6 (Length: 456)
Name: NF20977_low_6
Description: NF20977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20977_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 120 - 425
Target Start/End: Original strand, 1550084 - 1550389
Alignment:
| Q |
120 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1550084 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
1550183 |
T |
|
| Q |
220 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataagagtaataggaagaaaacataacttgttattgcactcacca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1550184 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataagagtaataggaagaaaacataacttgttattgcactcacca |
1550283 |
T |
|
| Q |
320 |
ccgccgtacatggttgcaacgacactgtaaactcaacagcgcaattagggtttagaaaaaatttatgaattttagggtttttgaaaattgttgcgttata |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1550284 |
ccgccgtacatggttgcaacgacactgtaaactcaacagcgcaattagggtttagaaaaaatttatgaattttagggttattgaaaattgttgcgttata |
1550383 |
T |
|
| Q |
420 |
gtttaa |
425 |
Q |
| |
|
|||||| |
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|
| T |
1550384 |
gtttaa |
1550389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 120 - 423
Target Start/End: Complemental strand, 23022935 - 23022641
Alignment:
| Q |
120 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||| ||||||||||||||| |
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| T |
23022935 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccagcataaccagctttacacgtatgtgaacccagatcaattactatagc |
23022836 |
T |
|
| Q |
220 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataagagtaataggaagaaaacataacttgttattgcactcacca |
319 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||||||| |
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| T |
23022835 |
tgaaacttcatctgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataa---------gaagacaacataactcgtttccgcactcacca |
23022745 |
T |
|
| Q |
320 |
ccgccgtacatggttgcaacgacactgtaaactcaacagcgcaattagggtttagaaaaaatttatgaattttagggtttttgaaaattgttgcgttata |
419 |
Q |
| |
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|| |||||||| ||||||||| |||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
23022744 |
ccaccgtacatagttgcaacggcactgtaaactcaacaacgcaattaggatttagaaaaaacttatgaattttagggtttttgaaaattgttgggttatg |
23022645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 1549982 - 1550026
Alignment:
| Q |
18 |
atgaacggcaaaacaataaagctgaaagcagataataataacaat |
62 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1549982 |
atgaacggcaaaacaataaagctgaaagcagataataataacaat |
1550026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 120 - 423
Target Start/End: Complemental strand, 27998026 - 27997721
Alignment:
| Q |
120 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||||||| |
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| T |
27998026 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccagcataaccagctttacaagtatgtgaacccagatcaattactatagc |
27997927 |
T |
|
| Q |
220 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaata--agagtaataggaagaaaacataacttgttattgcactcac |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| ||| |||||||| |
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| T |
27997926 |
tgaaacttcatctgaaaattcaacaaaatgaacaatgttaagaactatcagaacaataagagagtaataagaagataacataactcgtttccgcactcac |
27997827 |
T |
|
| Q |
318 |
caccgccgtacatggttgcaacgacactgtaaactcaacagcgcaattagggtttagaaaaaatttatgaattttagggtttttgaaaattgttgcgtta |
417 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
27997826 |
caccatcgtacatagttgcaacgacactgtaaactcaacaacgcaattagggtttagaaaaaacttatgaattttagggtttttgaaaattgttgcgtta |
27997727 |
T |
|
| Q |
418 |
tagttt |
423 |
Q |
| |
|
| |||| |
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|
| T |
27997726 |
tggttt |
27997721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 120 - 338
Target Start/End: Complemental strand, 28005366 - 28005146
Alignment:
| Q |
120 |
gtgtaatgaaagcacttacagaaggaaacacagctttgggagcatcttcaccggcataaacagctttgcaagtatgtgaacccaaatcaattactatagc |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
28005366 |
gtgtaatgaacacacttacagaaggaaacacagctttgggagcatcttcaccggcataaccagctttacaggtatgtgaacccaaatcaattactatagc |
28005267 |
T |
|
| Q |
220 |
tgaaacttcatttgaaaattcaacaaaatgaacaatgttaagaactatcagaacaata--agagtaataggaagaaaacataacttgttattgcactcac |
317 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||| |||| || ||||| |||| ||||||| | ||||||||||||| ||||| | |||||||| |
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|
| T |
28005266 |
tgaaacttcatctgcaaattcaacaaaacaaacaatgttgagaagtagcagaagaataagagagtaagaagaagaaaacataaattgttctcgcactcac |
28005167 |
T |
|
| Q |
318 |
caccgccgtacatggttgcaa |
338 |
Q |
| |
|
| ||||||||||||| ||||| |
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|
| T |
28005166 |
ccccgccgtacatggctgcaa |
28005146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 27998104 - 27998072
Alignment:
| Q |
30 |
acaataaagctgaaagcagataataataacaat |
62 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
27998104 |
acaataaagctgaaagcagataataataccaat |
27998072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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