View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20978_high_10 (Length: 275)

Name: NF20978_high_10
Description: NF20978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20978_high_10
NF20978_high_10
[»] chr1 (2 HSPs)
chr1 (113-272)||(39367326-39367483)
chr1 (18-111)||(39366528-39366621)
[»] chr2 (2 HSPs)
chr2 (163-272)||(7703194-7703302)
chr2 (113-272)||(27150442-27150595)
[»] chr7 (3 HSPs)
chr7 (232-272)||(26618446-26618486)
chr7 (232-272)||(26620418-26620458)
chr7 (232-272)||(26607880-26607920)
[»] chr4 (3 HSPs)
chr4 (163-272)||(24558278-24558378)
chr4 (232-272)||(37744388-37744428)
chr4 (231-268)||(21318401-21318438)
[»] chr5 (1 HSPs)
chr5 (232-272)||(31571636-31571676)
[»] chr3 (1 HSPs)
chr3 (232-272)||(25338450-25338490)
[»] chr8 (1 HSPs)
chr8 (232-268)||(6224088-6224124)
[»] chr6 (1 HSPs)
chr6 (232-272)||(24631556-24631596)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 113 - 272
Target Start/End: Original strand, 39367326 - 39367483
Alignment:
Q  113 atgttatgttgtgttgtaattgtgaatctatatgannnnnnnctttctttcttaggatatggtaggattgattttattctcagggaatataacaatataa 212  Q
    |||||||||||||| ||||||||||||||||||||        ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39367326 atgttatgttgtgtggtaattgtgaatctatatgatttttt--ttttttgcttaggatatggtaggattgattttattctcagggaatataacaatataa 39367423  T
Q  213 gaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39367424 gaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaatcaataggat 39367483  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 39366528 - 39366621
Alignment:
Q  18 agctaattagcacgaagctttcatggacaatctaaatgaagacaagaaagcaaaggaaataaaaatatgcataaattcccaagtctaaagagag 111  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39366528 agctgattaacacgaagctttcatggacaatctaaatgaagacaagaaagcaaaggaaataaaaatatgcataaattcccaagtctaaagagag 39366621  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 7703302 - 7703194
Alignment:
Q  163 cttaggatatggtaggattgattttattctcagggaatataacaatataagaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaa 262  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||||||| |  ||| ||| |||||||||||| |||| |||||    
T  7703302 cttaggatatggtaggattggttttactctcaggaaatataacaatatcagaggaagtccttcctct-cttcttctcttcagaaagtagaaacatttaaa 7703204  T
Q  263 tcaataggat 272  Q
    ||||||||||    
T  7703203 tcaataggat 7703194  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 272
Target Start/End: Original strand, 27150442 - 27150595
Alignment:
Q  113 atgttatgttgtgttgtaattgtgaatctatatgannnnnnnctttctttcttaggatatggtaggattgattttattctcagggaatataacaatataa 212  Q
    ||||| |||||||| ||||||||||||||||||||        |||  | |||||||||||||||||||| ||||| ||||  ||||||||||||| | |    
T  27150442 atgttctgttgtgtggtaattgtgaatctatatgatgtt----ttttgtgcttaggatatggtaggattggttttactctcttggaatataacaat-tca 27150536  T
Q  213 gaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    ||||| |||||||||    |||||||||||||||| || |||||||||||||||||||||    
T  27150537 gaggaagtccttcctccg-ttcctctgttcagaaattaacaacacttaaatcaataggat 27150595  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 26618446 - 26618486
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26618446 ttcctctgttcagaaagtagcaacacttaaatcaataggat 26618486  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 26620418 - 26620458
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  26620418 ttcctctgttcataaagtagcaacacttaaatcaataggat 26620458  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 26607880 - 26607920
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  26607880 ttcctctgttctggaagtagcaacacttaaatcaataggat 26607920  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 24558278 - 24558378
Alignment:
Q  163 cttaggatatggtaggattgattttattctcagggaatataacaatataagaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaa 262  Q
    ||||||||||||||||||||  | || | ||||||||||||||||||| |||||| |||         || ||||| |||||||||||||||||||||||    
T  24558278 cttaggatatggtaggattggctatactttcagggaatataacaatatcagaggaagtc---------atgcctctattcagaaagtagcaacacttaaa 24558368  T
Q  263 tcaataggat 272  Q
    | ||||||||    
T  24558369 ttaataggat 24558378  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 37744388 - 37744428
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    ||||||| |||||||||||||||||||||||||||| ||||    
T  37744388 ttcctctcttcagaaagtagcaacacttaaatcaattggat 37744428  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 21318438 - 21318401
Alignment:
Q  231 attcctctgttcagaaagtagcaacacttaaatcaata 268  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  21318438 attcctctgttcagaaaatagcaacaattaaatcaata 21318401  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 31571676 - 31571636
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  31571676 ttcctctgttcagaaagtggcaacacttaaatcaataggat 31571636  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 25338450 - 25338490
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  25338450 ttcctctgtttagaaagtagcaacacttaaatcaataggat 25338490  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 6224124 - 6224088
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaata 268  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6224124 ttcctctgttcaaaaagtagcaacacttaaatcaata 6224088  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 24631556 - 24631596
Alignment:
Q  232 ttcctctgttcagaaagtagcaacacttaaatcaataggat 272  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
T  24631556 ttcctcttttcagaaagttgcaacacttgaatcaataggat 24631596  T

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